Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e12
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-5|AAQ01535.1|  434|Caenorhabditis elegans Hypothetical pr...    40   0.002
U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical pr...    40   0.002
AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical ...    37   0.010
AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical ...    36   0.017
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    31   0.84 
AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical ...    30   1.1  
U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine rece...    28   5.9  

>U28928-5|AAQ01535.1|  434|Caenorhabditis elegans Hypothetical
           protein C44B7.6b protein.
          Length = 434

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 417 LIKGFFGAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLVKSA 557
           L+KG  GAG  +V +A+  +G  + LV+  V+G +   CM+ LVK A
Sbjct: 30  LMKGMLGAGCFSVPLAFKQSGYVSGLVIIVVLGFLCALCMIKLVKCA 76


>U28928-4|AAA68337.2|  489|Caenorhabditis elegans Hypothetical
           protein C44B7.6a protein.
          Length = 489

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 417 LIKGFFGAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLVKSA 557
           L+KG  GAG  +V +A+  +G  + LV+  V+G +   CM+ LVK A
Sbjct: 85  LMKGMLGAGCFSVPLAFKQSGYVSGLVIIVVLGFLCALCMIKLVKCA 131


>AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical
           protein T27A1.5 protein.
          Length = 449

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = +3

Query: 402 ESTAYLIKGFFGAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLVKSAHKMYVLLR 581
           ++  ++IK   G G+L++ +A+  +G+W  L++   +  I   C   L+   H +  + R
Sbjct: 43  QALIHMIKVMMGTGMLSLPLAFKHSGIWLGLILLCFICLICIYCTRQLIFGQHYITFIKR 102

Query: 582 VPRLTYA 602
             R+ YA
Sbjct: 103 EQRMDYA 109


>AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical
           protein Y43F4B.7 protein.
          Length = 455

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +3

Query: 414 YLIKGFFGAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLVKSAH 560
           +++K   G G+L++ +A+  +GL+  L++T ++  I   CM  +V +AH
Sbjct: 57  HMVKAMLGTGLLSLPLAFKHSGLFLGLILTVLICLICLYCMRQVVFAAH 105


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 426 GFFGAGILNVHVAYMFAGLWTSLVVTFVMGGIICRCMMLLV 548
           G  G G  ++ V++  AGLW      F++GG+    M  +V
Sbjct: 47  GMMGPGCFSLAVSFKQAGLWGGFASVFIIGGLSLYSMHKIV 87


>AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical
           protein Y32F6A.4 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 378 SPLLYNLFESTAYLIKGFFGAGILNVHVAYMFAGLWTSLVVTFVMGGII 524
           +P   N F +  +++    G GI+ +  A + A  WT L+V  ++ G++
Sbjct: 51  NPAGLNWFVTGLFVVGDLAGGGIVALPTAIIQAEFWTGLIVCVILIGVV 99


>U80842-2|AAB37948.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein51 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 492 LVVTFVMGGIICRCMMLLVKSAHKMYVLLRVPR 590
           ++V F++ G I   +++   S +K Y+L ++PR
Sbjct: 277 IIVLFLLRGSIHSVILIATTSPYKKYILRKIPR 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,922
Number of Sequences: 27780
Number of extensions: 267082
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)