Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e12
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 158 ERRYIFIITTFREHICETPDSIVVFEHIAFIIPISCVYF-FFVN 30
           E + +FI+        +   +I++ + + F+IPI  ++  FFV+
Sbjct: 200 ESKTVFILNNEIIRSIQGTGTIILKKTVCFVIPIMLLFLAFFVS 243


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 480 LWTSLVVTFVMGGII 524
           +WT + +TFV G ++
Sbjct: 306 IWTGVCLTFVFGALL 320


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 480 LWTSLVVTFVMGGII 524
           +WT + +TFV G ++
Sbjct: 306 IWTGVCLTFVFGALL 320


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 273 NLNQYLDFERDSSVATYELYPGTETDNYDFTVERH 377
           ++NQ +  + +  +   E YP  E D      ERH
Sbjct: 177 HINQNMGDKVEIGIDLREYYPSVEWDILGVPAERH 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,014
Number of Sequences: 438
Number of extensions: 3357
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)