Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e11
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   9.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.4  

>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 280 SESAKLVETGQEIGPVRARTCVPAKDF 360
           SES KL+   +++G     TC+ + DF
Sbjct: 289 SESGKLLTALEKVGQANDHTCLASIDF 315


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 370  TVSYSMCSKLSKELSASEIFSRIAVTRPHCTLCKKHLCTDAAHCXTGD 513
            T  YS+  +      +S I   ++  +  C   KK +C   A C TGD
Sbjct: 2383 TTFYSLLDQTKLFTRSSNITESLSF-KELCNYLKKKICYILAWCCTGD 2429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,168
Number of Sequences: 5004
Number of extensions: 19701
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)