Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e11
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0306 + 22223514-22224095,22225426-22225638,22226310-222265...    29   1.8  
03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666...    28   4.1  
03_05_0828 - 28021095-28021694                                         28   5.4  
01_01_0595 - 4430738-4430785,4430904-4432679                           27   9.5  

>11_06_0306 +
           22223514-22224095,22225426-22225638,22226310-22226576,
           22227002-22227322
          Length = 460

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -3

Query: 479 RCFLQSVQCGRVTAIRENISEADSSLLSLLHMEYETVFLEK 357
           R +LQS     +TA +E +SEA S L S L++E +   L K
Sbjct: 231 RSYLQSAFTNLMTASKETVSEAVSKLKSRLNIESKVRTLTK 271


>03_02_0236 +
           6666104-6666202,6666530-6666832,6667476-6667550,
           6668329-6668367,6668905-6668923,6669796-6669852,
           6670432-6670559,6670644-6670712,6671116-6671201,
           6671285-6671394,6672060-6672110,6672602-6672660,
           6672953-6672997,6673132-6673206,6673314-6673430
          Length = 443

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +1

Query: 199 HPDYANITIPNIDCYIPGMEFLCIVITSESAKLVET-GQEIGPVRARTCVPAKDFSKKTV 375
           +P Y +  IP  D  + GM++L   I + S K++E  G E   V     V +     K  
Sbjct: 206 YPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVR 265

Query: 376 SYSMCSKLSKELSASEIFSRIA 441
             S      + LS S    RIA
Sbjct: 266 IVSPDKDFFQILSPSLRLLRIA 287


>03_05_0828 - 28021095-28021694
          Length = 199

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 138 RRGRHELL-RLDLLVFGRHERGHTEEQQCSE 49
           R G   LL RL L +FGR  RG T  + CS+
Sbjct: 102 RAGSSGLLERLTLGLFGRRRRGRTSSRACSK 132


>01_01_0595 - 4430738-4430785,4430904-4432679
          Length = 607

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 241 YIPGMEFLCIVITSESAKLVETGQEIGPVRARTCV-PAKDFSKKTVSYSMCSKLSKELSA 417
           +IP  ++ C V T+ +AK    G +  P   R C+ PA+  + K  + +  + ++  L  
Sbjct: 444 FIPDGDWFCSVCTAAAAK-KSKGNKPPPPPPRCCLCPARGGAMKRTTDARWAHIACALLV 502

Query: 418 SEIFSR 435
            E+F R
Sbjct: 503 PEVFFR 508


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,881,775
Number of Sequences: 37544
Number of extensions: 146237
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)