Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12e11
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 28 3.7
U97003-5|AAB52272.1| 353|Caenorhabditis elegans Hypothetical pr... 28 3.7
AL031620-4|CAA20925.1| 456|Caenorhabditis elegans Hypothetical ... 28 4.8
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 28 4.8
Z81509-3|CAB04156.1| 532|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF040653-10|AAB95029.1| 580|Caenorhabditis elegans F-box b prot... 27 6.4
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 27 6.4
Z81098-4|CAB03181.1| 180|Caenorhabditis elegans Hypothetical pr... 27 8.5
AJ871144-1|CAI38753.2| 476|Caenorhabditis elegans UDP-galactopy... 27 8.5
AF324057-1|AAK01418.1| 180|Caenorhabditis elegans Ly-6-related ... 27 8.5
AF125442-8|AAD12787.2| 476|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 408 AVRLRDILSDSGDAAALHALQEAPVYGRGALL 503
+ LR+ L +SGD +HA +YG G +
Sbjct: 341 SAHLREALKESGDNILVHAFARDSIYGTGCTI 372
>U97003-5|AAB52272.1| 353|Caenorhabditis elegans Hypothetical
protein F47C10.7 protein.
Length = 353
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -3
Query: 473 FLQSVQCGRVTAIRE-NISEADSSLLSLL 390
FL S+QCG V+ + E ++E + ++LS+L
Sbjct: 236 FLNSIQCGLVSRVAELKVTELEHAMLSVL 264
>AL031620-4|CAA20925.1| 456|Caenorhabditis elegans Hypothetical
protein C18B12.4 protein.
Length = 456
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 445 TRPHCTLCKKHLCTDA-AHCXTGDVTRTT 528
TR C LCK+ + TD+ + C T D+ T+
Sbjct: 281 TRKICPLCKRKIGTDSDSECSTNDLASTS 309
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 340 CVPAKDFSKKTVSYSMCSKLSKELSASEIFSRI 438
C+P FSK+T+ Y + S L+++L S I ++
Sbjct: 6 CIPHGTFSKQTIYYQLWSFLNRKLILSCIIMQL 38
>Z81509-3|CAB04156.1| 532|Caenorhabditis elegans Hypothetical
protein F21A3.5 protein.
Length = 532
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 394 KLSKELSASEIFSRIAVTRPHCTLCKKHLCTDAA 495
K + L SE + R+ TR H T+ K H T+ A
Sbjct: 388 KHQRSLEISEEWERLQATREHYTVMKNHTETEMA 421
>AF040653-10|AAB95029.1| 580|Caenorhabditis elegans F-box b protein
protein 49 protein.
Length = 580
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -3
Query: 419 EADSSLLSLLHMEYETVFLEKSLAGTHVLARTGPISCPVSTNLADSDVMTIHRNSMPGM 243
E +LL LL EYE V L L+ +L + I ST D DV ++ M G+
Sbjct: 238 EIAPTLLPLLSQEYEIVNLAFVLSLNELLLTSCTILQVTSTLFTDKDVNVFLKHWMAGL 296
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 352 KDFSKKTVSYSMCSKLSKELSASEIF-SRIAVTRPHCTL 465
KDF + C K S S+S IF +R+++T+ H +L
Sbjct: 303 KDFRIGVKDFFKCGKKSDNTSSSTIFTTRLSLTKSHLSL 341
>Z81098-4|CAB03181.1| 180|Caenorhabditis elegans Hypothetical
protein K07A12.6 protein.
Length = 180
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 133 STKGIKCYNCLSFDHPGCWDPDHPDYANITIPNID 237
S + +KC++C SF++ +D D + +P D
Sbjct: 17 SVELLKCFSCASFEYRVLFDKDTSLSRKVRVPKFD 51
>AJ871144-1|CAI38753.2| 476|Caenorhabditis elegans
UDP-galactopyranose mutase protein.
Length = 476
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 238 CYIPGMEFLCIVITSESAKLVETG 309
C+I G EF+ VI E KL +TG
Sbjct: 446 CFIQGKEFIDRVILGEPEKLYKTG 469
>AF324057-1|AAK01418.1| 180|Caenorhabditis elegans Ly-6-related
protein HOT-5 protein.
Length = 180
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 133 STKGIKCYNCLSFDHPGCWDPDHPDYANITIPNID 237
S + +KC++C SF++ +D D + +P D
Sbjct: 17 SVELLKCFSCASFEYRVLFDKDTSLSRKVRVPKFD 51
>AF125442-8|AAD12787.2| 476|Caenorhabditis elegans Hypothetical
protein H04M03.4 protein.
Length = 476
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 238 CYIPGMEFLCIVITSESAKLVETG 309
C+I G EF+ VI E KL +TG
Sbjct: 446 CFIQGKEFIDRVILGEPEKLYKTG 469
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,143,348
Number of Sequences: 27780
Number of extensions: 117678
Number of successful extensions: 463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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