Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e10
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   6.5  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.5  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 238 FYSEFKNVLQVSFPETDGFSFQDIVF 315
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 263 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 159
           KT+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 407 KTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 395 LIYHVKIFYINYEQIIAICFYFGILMSFDFMYIYSYVSTV 514
           ++  ++IF IN++ I  I FY G    FD   I + +S +
Sbjct: 251 ILCFMQIFCINWDGIARIQFYLG---KFDISLIMALISAI 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,442
Number of Sequences: 5004
Number of extensions: 44497
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)