Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e09
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 394 PAIPGSISPRANAEPIVRVPVLPLSNTLC 480
           P    ++    N++ I R+P+LP+    C
Sbjct: 767 PPSAQNVPQNTNSQAIPRIPILPMIPVYC 795


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 255 TEILFQGWKTTNALELFGS 311
           T+ + QG++TT + ++FGS
Sbjct: 278 TKAINQGFRTTKSSKMFGS 296


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 392 CQRFQGQYHQERMRNQ*SVCRYCRCQILYAVG 487
           C+  +     +R RN+   C+YCR Q   A+G
Sbjct: 146 CREEKSCIIDKRQRNR---CQYCRYQKCLAMG 174


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 392 CQRFQGQYHQERMRNQ*SVCRYCRCQILYAVG 487
           C+  +     +R RN+   C+YCR Q   A+G
Sbjct: 146 CREEKSCIIDKRQRNR---CQYCRYQKCLAMG 174


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 288 NALELFGSAVAIF 326
           NAL+LFGS  A+F
Sbjct: 55  NALDLFGSPDAMF 67


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 377 HTGLICQRFQGQY 415
           H+G +C+R Q +Y
Sbjct: 292 HSGFLCERHQKRY 304


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 496 MWPPDSIEYLTTAVPAHGLLVPHSLLVI 413
           +W PD+  Y       H + VP+ LL I
Sbjct: 117 IWRPDTYFYNGKHSYVHTITVPNKLLRI 144


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 488  RPHNTDVPPLH 520
            RPH TD  P+H
Sbjct: 1387 RPHPTDNAPIH 1397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,793
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)