Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12e08
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 38 0.007
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 30 1.1
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 30 1.1
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 30 1.5
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 29 1.9
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 29 1.9
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 2.5
03_03_0141 + 14779557-14779600,14779686-14779749,14779827-147798... 28 4.4
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359... 28 5.9
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 272 ELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 370
+L Q+LD+ +D ID + YT WP+DRWEE
Sbjct: 701 DLQQQLDQFMDGRIDGSILKLYTLHWPQDRWEE 733
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +2
Query: 257 EEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLA 436
EE + +K DK + +F+ ++K G EE HP F S NG + P
Sbjct: 208 EENSFQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNK 267
Query: 437 EGL 445
EG+
Sbjct: 268 EGV 270
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/81 (32%), Positives = 36/81 (44%)
Frame = +2
Query: 290 DKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANLKFDPE 469
+KE+ D D EK+ EG ED EE+ +K K + E S + + PE
Sbjct: 216 EKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWSLVNKQKPIWMRKPE 275
Query: 470 ENTPVELASNYKEDGNFXFKH 532
E T E A+ YK N +H
Sbjct: 276 EITKEEYAAFYKSLTNDWEEH 296
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 347 WPEDRWEEEMDKHPFFMK 400
+PED+W +++DKH F+K
Sbjct: 455 FPEDKWLDQVDKHQMFIK 472
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = +2
Query: 290 DKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANLKFDPE 469
+KE+ D D EK+ EG ED EE+ +K K + E + + + PE
Sbjct: 216 EKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWNVMNKQKPIWLRKPE 275
Query: 470 ENTPVELASNYKEDGNFXFKH 532
E T E A+ YK N +H
Sbjct: 276 EITKEEYAAFYKSLTNDWEEH 296
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/81 (30%), Positives = 36/81 (44%)
Frame = +2
Query: 290 DKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANLKFDPE 469
+KE+ D D EK+ EG ED EE+ +K K + E + + + PE
Sbjct: 216 EKEISDDEDEEEKKDAEEGKVEDVDEEKEEKEKKKKKIKEVSHEWNVMNKQKPIWLRKPE 275
Query: 470 ENTPVELASNYKEDGNFXFKH 532
E T E A+ YK N +H
Sbjct: 276 EITKEEYAAFYKSLTNDWEEH 296
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 275 LCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 370
L ++L++ +D ID R YT W +RW+E
Sbjct: 959 LQEQLNQFMDRRIDGNNLRLYTSHWAPERWQE 990
>03_03_0141 +
14779557-14779600,14779686-14779749,14779827-14779860,
14780308-14780438,14780655-14780728,14780869-14780947,
14781054-14781143,14781401-14781474,14782317-14782404,
14782654-14782780,14782864-14782968,14783446-14783569,
14783651-14783702,14784150-14784255,14784770-14784831,
14784912-14784956,14785527-14785625,14785772-14785924
Length = 516
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 259 FGHWGFYITFISLGHDL 209
FG+WG Y+ +SLG++L
Sbjct: 303 FGYWGMYLIGVSLGYNL 319
>10_08_1045 -
22535516-22535593,22535681-22535756,22535843-22535946,
22536048-22536176,22536539-22536700,22537029-22537259,
22537345-22537428,22537515-22537583,22537671-22537739,
22537827-22537889,22537913-22538052,22538527-22539097
Length = 591
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 200 KSN*IMAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTE 343
KS+ I + N D+ E ++ E C DK++ D +K + +E
Sbjct: 250 KSSQIQKDKNVQDITRDSEESKQSESCIPTDKDVQDITSDSKKSKQSE 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,544
Number of Sequences: 37544
Number of extensions: 226285
Number of successful extensions: 631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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