Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e07
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       85   5e-17
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         55   4e-08
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   6e-07
SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   8e-04
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              31   0.87 
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   29   2.6  
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     29   3.5  
SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_23290| Best HMM Match : SRCR (HMM E-Value=0)                        27   8.1  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    27   8.1  
SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)                 27   8.1  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      27   8.1  

>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 40/122 (32%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
 Frame = +2

Query: 197 TKLTVLDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 373
           T +T L NG+++A+E+S    +TVG+ ID GSRYE    NGV H +E MAF+ T+K  S 
Sbjct: 417 THVTTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPSH 476

Query: 374 TDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERG 553
            D+   +E +G   +  + R+  V+      + +P+AVE+L++ +    +   E++ ++ 
Sbjct: 477 DDIMQELEPVGGMADCTSFRDAIVYGTSSFTSGLPLAVEVLSEAVMRPQITSQEVDEQKM 536

Query: 554 VI 559
           ++
Sbjct: 537 LV 538


>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/50 (46%), Positives = 36/50 (72%)
 Frame = +2

Query: 200 KLTVLDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAF 349
           ++T LDNGL++A+ ++ +  + VGL+ DAGSRYET  N G+ H L + A+
Sbjct: 31  QVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLGITHMLRNAAY 80


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +2

Query: 482 AVEILADIIQNSSLAEPEIERERGVILRE 568
           AV+ILADIIQNS+L E EIERERGVILRE
Sbjct: 35  AVDILADIIQNSTLGEAEIERERGVILRE 63


>SB_7914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 260 ATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQTDLELLVENMGAHLNAYTSRE 436
           A   L I  GS  +     G+AHFLEHM F G+ K   +   +  ++  G + NA+T  E
Sbjct: 173 AAAALCIGTGSFSDPDDIPGLAHFLEHMVFMGSEKYPDENSFDAFIKKHGGNSNAFTDCE 232

Query: 437 Q 439
           +
Sbjct: 233 R 233


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +2

Query: 59  LTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVLDNGLRIAT 238
           +T +    T +   A T+  +++    V T+ATAAA    +     T  TV      + T
Sbjct: 580 VTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTT 639

Query: 239 EDSGAATAT 265
             + AAT T
Sbjct: 640 VTTAAATLT 648



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/77 (25%), Positives = 32/77 (41%)
 Frame = +2

Query: 35  VNRQGKNILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVL 214
           V      + T +  +TT +   A T+  +++    V T+ TAAA    +     T  TV 
Sbjct: 563 VTTAAATVTTAAATVTT-VTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAATVTTVT 621

Query: 215 DNGLRIATEDSGAATAT 265
                + T  + AAT T
Sbjct: 622 TAAATLTTVTTAAATLT 638



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 80  TTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVLDNGLRIATEDSGAAT 259
           TT    V T    +++    V T+ TAAA    +     T  TV      + T  + AAT
Sbjct: 557 TTAAATVTTAAATVTTAAATVTTVTTAAATVTTVTTAAATVTTVTTAAATVTTVATAAAT 616

Query: 260 AT 265
            T
Sbjct: 617 VT 618



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 59  LTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVLDNGLRIAT 238
           +T +    T +   A T+  +++    V T+ TAAA    +     T  TV      + T
Sbjct: 590 VTTAAATVTTVTTAAATVTTVATAAATVTTVTTAAATLTTVTTAAATLTTVTTAAATLTT 649

Query: 239 EDSGAATAT 265
             + AAT T
Sbjct: 650 VTTAAATLT 658


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 282 SIQSPTVAVAAPESSVAIRKPLSSTVSLVGGTFTNA 175
           S QS + AV+AP SS   R P+S+     GG F+ +
Sbjct: 449 STQSISQAVSAPSSSTPSRVPISAAPPAGGGLFSGS 484


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 40  SARKKYFNS*YKDHNKNVESSNHFESNFQP--GQSGTYVSNRSCIQ 171
           S+ K+Y N   KD N+ V++ N    N Q      G YV   +C+Q
Sbjct: 748 SSDKRYINGHAKDENETVKNGNMNLDNSQKYFSPEGLYVHLSTCLQ 793


>SB_25099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 56  ILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPTKLTVL 214
           + T +I +TT+ + V T   V+++Q   V TLA A   +  +V      +T L
Sbjct: 15  VTTQTIVLTTQTIVVTTQTIVVTTQTIVVTTLAIAVTTQTIVVTTQTIVVTTL 67


>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 567 SRRMTPRSRSISGSAREEFCMISARISTATGTSLARHFA 451
           S+  TP + S S ++ +  C   ++ S  +G+SLARHFA
Sbjct: 341 SQNKTPAASSSSSASGDHQCTQCSK-SFNSGSSLARHFA 378


>SB_23290| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 478

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -1

Query: 313 VLGGFIAGASVDPESY-SGSGG---SRIFSSNTQTIIEYCEFSRWNIY*C 176
           +LGG+ A ++V    + +GSG      +   NT++ +  C F+ W ++ C
Sbjct: 71  MLGGYAATSAVSGGRFPAGSGPIWMDNVHCINTESDLSECPFNGWGVHDC 120


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = +2

Query: 20   LPIHYVNRQGKNILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQALVNVPPT 199
            +P H V  QG  ++   I++TT  L +        S+ ++   L  A    +ALV+    
Sbjct: 1044 IPDHQVRLQGTQVIQGDIEMTTIELSLPP-----GSESHEATALQAAV---EALVSASQQ 1095

Query: 200  KLTVLDNGLRIATEDSGA 253
            ++ V    + +  E+ GA
Sbjct: 1096 QIPVEQESMEVTEEEGGA 1113


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 201 NSQYSIMVCVLLLKIREPPLPL*DSGSTLAP 293
           ++QY+   C+ L++ R P LPL  S +T +P
Sbjct: 442 STQYATARCIYLIRHRVPHLPLTPSRATSSP 472


>SB_1943| Best HMM Match : Vicilin_N (HMM E-Value=0.67)
          Length = 695

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 82  NKNVESSNHFESNFQPGQSGTYVSNRSCI-QTGISKCSTD*THSTR*WFAYCY*RFGSRH 258
           NK++E+ +++E +   G++     N  CI +T I   S         W   CY  + +R 
Sbjct: 478 NKSLEAKHYYEKHTCDGENSGRSPNPMCITKTSIDHVS---GFPLSDWLGACYLGYTTRE 534

Query: 259 CHCRTLDR 282
             C  L++
Sbjct: 535 LACHNLEQ 542


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 82  NKNVESSNHFESNFQPGQSGTYVSNRSCI-QTGISKCSTD*THSTR*WFAYCY*RFGSRH 258
           NK++E+ +++E +   G++     N  CI +T I   S         W   CY  + +R 
Sbjct: 380 NKSLEAKHYYEKHTCDGENSGRSPNPMCITKTSIDHVS---GFPLSDWLGACYLGYTTRE 436

Query: 259 CHCRTLDR 282
             C  L++
Sbjct: 437 LACHNLEQ 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,690,244
Number of Sequences: 59808
Number of extensions: 381667
Number of successful extensions: 939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)