Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12e04
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 28 0.94
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 27 2.9
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 5.0
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 26 5.0
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 6.6
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 6.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 6.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 8.8
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 25 8.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.8
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 0.94
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 352 SKPRYLGSWLPDRPGVTSPRC--WRRAPSS 435
S P Y SW+P + S RC W +PSS
Sbjct: 282 SHPLYSSSWIPTLHDLVSTRCSVWLTSPSS 311
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 441 ASPEDVAWNIFRCGYNRKAVLFDYMPAGGASSGNTENHP*LLSS 572
++P+ AW N + Y+ +G + GNT NHP +SS
Sbjct: 116 SNPQGYAWTPSLLSSNATS----YLHSGSSPHGNTSNHPSPISS 155
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 47 HSNQRPPQHRPHEH 6
H + RPP H PH H
Sbjct: 170 HPHTRPPHHPPHPH 183
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -2
Query: 325 LQLSRTQYTCFLSAASSISSPFIMDSNSLGST 230
L+LS+ + FL SSISSP DS+S ST
Sbjct: 58 LRLSKIK-DVFLMQGSSISSPDTYDSSSSSST 88
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 442 APGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFP 332
A GC HA + R + P+I SSFP P
Sbjct: 539 AIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDP 575
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 457 WPGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPSY-LVPIPTY 585
WP + +T R C P+A LAA +P Y VP P Y
Sbjct: 165 WPEDVQENSTLPERKLPKGCMPLAALAA--NCMPQYFFVPGPVY 206
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 505 NSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSRPAGL---AASFPSIAALSSFPSF 335
N+ + + P ++ +T+SGL S SST S +AS S ++ S S
Sbjct: 973 NTNSLTVKPESSLSSSTTSGLTSSSSTIPSSTRSESNSESASTSSASKRSSSSTSLVQSN 1032
Query: 334 PIILQLSRTQYTCFLSAASSISSP 263
P+ +S Y S S + +P
Sbjct: 1033 PVKTVVSLESYKFTTSKISLVKNP 1056
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +3
Query: 402 VTKVLEACAEQPGASPE----DVAWNIFRCGYNRK 494
V KV+ CA G +PE DV F C ++R+
Sbjct: 672 VLKVVSQCASTDGVTPEYLRTDVLPEFFHCFWSRR 706
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 445 LAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFP 341
L+ GC H L R A L + P I + +FP
Sbjct: 541 LSSGCPPHGGIALGFDRLAALLTNAPGIREVIAFP 575
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 234 PLATARGRRRSENETSPSLPYPISHNSCI 148
P+AT+ GR + TS L YP S I
Sbjct: 1091 PIATSAGRSSTAASTSAPLTYPAGDRSHI 1119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,118
Number of Sequences: 5004
Number of extensions: 37916
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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