Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e04
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)               30   1.3  
SB_58655| Best HMM Match : Flotillin (HMM E-Value=1.1)                 29   2.3  
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    29   2.3  
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               28   5.3  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)              28   7.0  
SB_23363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)              27   9.2  

>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 135 QATTGCKNCVILGKEE---RAMFRSHSDACLAQSRVEPRLLESMMNGE 269
           Q+  GC +C  LG E    + M R HS   L + R+ PR+   M+ G+
Sbjct: 674 QSVKGCSDCDCLGCENPYGKKMQRGHSKVTLTRKRMAPRMTTEMVAGK 721


>SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)
          Length = 489

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 329 HLTTEQDAVHVLPQRCVIYQLAVHHGLQQPRLHSRLREAGVGVRTKHRPLFL 174
           HL T +  +H+L  R  ++ L VH GL      SR R++ V +  +  P  L
Sbjct: 430 HLLTVRKGLHLLTVRKGLHLLTVHKGLHLLTFRSRNRKSAVTIGLQIAPFDL 481



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 329 HLTTEQDAVHVLPQRCVIYQLAVHHGLQQPRLHSRL 222
           HL T +  +H+L  R V++ L VH GL   R+   L
Sbjct: 251 HLLTVRKGLHLLTVRKVLHLLTVHKGLHLLRVRKGL 286


>SB_58655| Best HMM Match : Flotillin (HMM E-Value=1.1)
          Length = 183

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
 Frame = -1

Query: 515 HVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVL 336
           H V +    VV   E     +    A +   R++      PG SGS     R F  LPV 
Sbjct: 94  HKVSELEKQVVKQRERTLELIAEKDAEIESLRMRSPSSSNPGGSGSAFAYSRKFMDLPVA 153

Query: 335 PDHLTTEQDAVHVLPQ-RCVIYQL 267
           P       D     P     +YQL
Sbjct: 154 PQEGDESADGADTSPDTSAAVYQL 177


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 384 RPAGRDVTKVLEACAEQPGASPEDVAWNIFRCGYNR 491
           RP G  V   L    E+P A+   +++  FRCG+ R
Sbjct: 35  RPEGEVVVDSLTVTVEKPFANESYLSYGFFRCGFFR 70


>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 395 PGRSGSQLPKYRGFEQLPVLPDHLTTEQDAVHVLPQRCVIY 273
           PG SGS +P+ +   + P   D L T ++A     Q+ VI+
Sbjct: 518 PGNSGSSIPRIKLKLEPPSTTDMLATTKEAKQPTAQKIVIH 558


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 252 TPTASAPLATARGRRRSENETSP 184
           TPT S P  T+R R    N TSP
Sbjct: 889 TPTTSKPALTSRSRSLDRNTTSP 911


>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
          Length = 849

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 358 PRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRT 456
           P  +G  +P  PG+T   C RR+P  P    +T
Sbjct: 615 PPMMGPQMPCAPGMTFGPCARRSPQRPETKSKT 647


>SB_23363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -1

Query: 425 ARLQHLGDVTPGRSGSQLPKYRGFEQLPVLPDHLTTEQDAVHVLPQRCVIY 273
           ARL H  + T   +    P Y  F + P LP  +T   D VH  PQ    Y
Sbjct: 17  ARLVHAYNATKHSTTGYSPSYLMFGRNPRLPQDVTLGPDPVH-YPQPYAAY 66


>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
          Length = 635

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 460 PGIYSDAATTGRRCCSTTCPPVAPLAATRRIIPS 561
           P   +DA T   R  S TC P  P  + RR+ PS
Sbjct: 107 PRDLTDAFTPPSRGISQTCVPFHPAESHRRVYPS 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,849
Number of Sequences: 59808
Number of extensions: 330330
Number of successful extensions: 1155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)