Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e04
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like nucl...    31   0.66 
AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical ...    31   0.66 
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    30   1.5  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    30   1.5  
AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    29   2.7  
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    28   6.1  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    28   6.1  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    28   6.1  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    27   8.1  
AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF162673-1|AAF80461.1|  568|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 568

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 448 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 293
           GLAPG    AS  ++ +  AG  A F +        S P++   + +  TCF
Sbjct: 513 GLAPGRKTVASKVMLRALCAGAIACFMNATVAGILISDPVVCNSANSNSTCF 564


>AF016413-5|AAB65255.1|  568|Caenorhabditis elegans Hypothetical
           protein F27E11.1 protein.
          Length = 568

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 448 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 293
           GLAPG    AS  ++ +  AG  A F +        S P++   + +  TCF
Sbjct: 513 GLAPGRKTVASKVMLRALCAGAIACFMNATVAGILISDPVVCNSANSNSTCF 564


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
 Frame = +1

Query: 331  SGRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCST 510
            +G T   + P   G W P  PG        R PS   + P  +       + T      T
Sbjct: 1533 AGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1592

Query: 511  --TCPPVAPLAATRRIIPSYLVPIPTY 585
              +  P +P A    + PSY    P+Y
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1619


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
 Frame = +1

Query: 331  SGRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCST 510
            +G T   + P   G W P  PG        R PS   + P  +       + T      T
Sbjct: 1540 AGNTDGGASPFNEGGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1599

Query: 511  --TCPPVAPLAATRRIIPSYLVPIPTY 585
              +  P +P A    + PSY    P+Y
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1626


>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 448 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 293
           GLAP   +  S  ++ +  AG  A F +        S P+I Q S+   TCF
Sbjct: 519 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 570


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 448 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 293
           GLAP   +  S  ++ +  AG  A F +        S P+I Q S+   TCF
Sbjct: 398 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 449


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 448 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 293
           GLAP   +  S  ++ +  AG  A F +        S P+I Q S+   TCF
Sbjct: 499 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 550


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 463 QATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQL 317
           Q T SG++PG +     T +TS  +G + S        S P  P+  Q+
Sbjct: 343 QITPSGISPGSTLVQQQTTLTSVSSGTSLSAQPSNVNPSIPGIPLASQV 391


>Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical
           protein T05G5.2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 517 PPVAPLAA-TRRIIPSYLVPIPTYRC 591
           PP AP A  +  I+ + LVP+P+Y+C
Sbjct: 179 PPPAPTAPQSHLIVNNQLVPMPSYQC 204


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -2

Query: 526 PPAGM*SNSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSS 347
           PP  +     A  + P   IF  ++S +A   S   S+T V  + +   AS+P++  L+ 
Sbjct: 90  PPPRVSQEREAPPIPPRSMIFPRSTSMVAE--SRKESTTAVAPKRSVAVASYPAVPELAE 147

Query: 346 FPSFPIILQ 320
            PS+   LQ
Sbjct: 148 LPSYTDALQ 156


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 424 HASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCFLSAASSIS 269
           H  + +VTSRP        S+ +  SFP+  + + +SR++ + F+ + +  S
Sbjct: 66  HQQNHIVTSRPPTPLTDLMSLRSFQSFPN--VFMPVSRSRTSSFIQSDTDSS 115


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 424 HASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCFLSAASSIS 269
           H  + +VTSRP        S+ +  SFP+  + + +SR++ + F+ + +  S
Sbjct: 66  HQQNHIVTSRPPTPLTDLMSLRSFQSFPN--VFMPVSRSRTSSFIQSDTDSS 115


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 493 RRCCSTTCPPVAPLAATRRIIPSYLVP 573
           RR C TT   VAP+A  R+  PS   P
Sbjct: 652 RRMCGTTAGSVAPVAQVRQTNPSRQPP 678


>AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical
           protein T22D1.3b protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 452 LGTSA----GLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVLPDHLTTE 315
           LG SA    GLL A  +  G+   G  G ++ KYRG   L  +  H +++
Sbjct: 397 LGASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQ 446


>AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical
           protein T22D1.3a protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 452 LGTSA----GLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVLPDHLTTE 315
           LG SA    GLL A  +  G+   G  G ++ KYRG   L  +  H +++
Sbjct: 397 LGASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQ 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,230
Number of Sequences: 27780
Number of extensions: 228256
Number of successful extensions: 866
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)