Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e01
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    29   0.70 
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   4.9  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    25   6.5  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.6  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 464 YTLKGYKDLVNNFHFSFYIRFVFN-VFCNLGSNYLIKMYHLK 586
           +TL  YKDL   F    Y+  ++N +  ++   +L+ + HLK
Sbjct: 707 FTLLAYKDLSTEFKPKIYVGQIWNSIMISMYREHLLSLEHLK 748


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 409 GINSSQSDYYYNNKLLFELHLERIQRSGQQF 501
           G++S  +DYYY +  +F+   E ++  G++F
Sbjct: 507 GMSSVNTDYYYGDNEVFDSGDEFLEDDGEEF 537


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 407 GS*LGRLLSIESDDELGDDMPLSIIILFT*LE 312
           G  +G + +IE+  ELG D P+++++ F  +E
Sbjct: 134 GPLIGWISAIEAHKELGIDFPVNLLMCFEGME 165


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 599 QHFFISNGTSLLNNCYLNYRIH 534
           +HF  SN TS ++ CYL ++ H
Sbjct: 144 KHFESSNDTSNVSPCYLQFQGH 165


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 518 IRFVFNVFCNLGSNYLIKMYHLK 586
           I +VF+ +C++   YL+  +HL+
Sbjct: 245 IEWVFSTWCSIFQKYLMNNWHLR 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,625
Number of Sequences: 5004
Number of extensions: 43539
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)