Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12e01
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    28   6.6  
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224...    28   6.6  

>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 455 YLNYTLKGYKDLVNNFHFSFYIRFVFNVFCNLGSNYLIKMYHLK 586
           YL+  ++G   L  N    ++++ VFN+  NL  N LIK + +K
Sbjct: 203 YLDLVIEGKLPL--NHEILYHLQDVFNLLPNLNVNELIKAFAVK 244


>01_05_0484 -
           22621614-22621676,22621798-22621911,22622006-22622453,
           22623052-22623179,22623747-22623821,22623954-22624040
          Length = 304

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 202 KRSREDDTCEFMP-LSKRINNLHINNGLVNTSASQSRDS 315
           KR R +DT    P  +KR NNL +N+G V  S+++  ++
Sbjct: 171 KRKRANDTTSEEPDNTKRQNNLSVNSGEVVQSSNEEAET 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,051,686
Number of Sequences: 37544
Number of extensions: 228564
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)