Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d23
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    30   0.82 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   1.4  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   1.4  
Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    27   7.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   7.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   7.7  

>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 362 NFKFNPSFLRQQLHICKHPFSRDDIASSRH 273
           N  +N  F+   L +C+ PF +DD+ +  H
Sbjct: 338 NETYNEHFILNHLEMCETPFDKDDLKNREH 367


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 164 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 343
           CK ++QC  +   VCG D     + + + C L    C E+K     K   C    +  E+
Sbjct: 317 CKCSEQCTMNSAHVCGTD----GKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEK 372

Query: 344 MD 349
           M+
Sbjct: 373 ME 374


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 164 CKIADQCQHDFVPVCGQDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKYEAAASER 343
           CK ++QC  +   VCG D     + + + C L    C E+K     K   C    +  E+
Sbjct: 325 CKCSEQCTMNSAHVCGTD----GKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEK 380

Query: 344 MD 349
           M+
Sbjct: 381 ME 382


>Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical
           protein F46F3.2 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  AEVWCHVEIEAEDYFFPLEPVINFCKI 172
           AEVW   E +AE Y  P+E + NF  I
Sbjct: 76  AEVWIRNEHDAEKYDVPVELLQNFTTI 102


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +2

Query: 137  FPLEPVINFCKIADQCQHDFVPVCGQDSLGISRM 238
            F +E V++ C+   +C++DF+ + G+  +G++ +
Sbjct: 1129 FTMEQVVSTCQNNPECEYDFI-MTGRKEVGLTTL 1161


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 212  QDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDV 313
            +D +GI ++FN     +E+ C  K +Y    +++
Sbjct: 4284 EDGIGILKVFNIQDGSHEFTCIAKNEYGQTTVEI 4317


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 212  QDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDV 313
            +D +GI ++FN     +E+ C  K +Y    +++
Sbjct: 4284 EDGIGILKVFNIQDGSHEFTCIAKNEYGQTTVEI 4317


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 212  QDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDV 313
            +D +GI ++FN     +E+ C  K +Y    +++
Sbjct: 4284 EDGIGILKVFNIQDGSHEFTCIAKNEYGQTTVEI 4317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,150,057
Number of Sequences: 27780
Number of extensions: 146683
Number of successful extensions: 405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)