Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d20
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 96  CYCWL*DGSGGPIRSNQNVNRAKLKWCTGSALITTSCRGSG 218
           C CW  D  GGP  S+       +   +G +++  +  G G
Sbjct: 11  CCCWCCDNLGGPGSSSAG---GVVTGASGGSIVVGANNGGG 48


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 152 QSCQAQVVHRLCPHHNVVQG 211
           +SC  + +  LCPH NV  G
Sbjct: 434 ESCLPEEI--LCPHFNVTDG 451


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 526 GRFPVQSLTESHL 488
           GRFP QSLT+  L
Sbjct: 343 GRFPPQSLTDMWL 355


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 275 QQVFW*VHPGAHRGCPSAPA 216
           QQ+F   +PG  + C ++PA
Sbjct: 16  QQLFSSANPGTIQACTTSPA 35


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 526 GRFPVQSLTESHL 488
           GRFP QSLT+  L
Sbjct: 311 GRFPPQSLTDMWL 323


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 544 ITGQFRGRFP 515
           + GQFRG FP
Sbjct: 54  LDGQFRGEFP 63


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 544 ITGQFRGRFP 515
           + GQFRG FP
Sbjct: 28  LDGQFRGEFP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,866
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)