Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d19
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.16 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.0  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   3.5  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   4.6  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   4.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   6.1  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   8.1  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   8.1  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   8.1  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 96  DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 218
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 135 PDSMATITMKPEYPPSEVYSTSEPPP 212
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 135 PDSMATITMKPEYPPSEVYSTSEPPP 212
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 123 KEHQPDSMATITMKPEYPPSEVYSTS 200
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 168 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 335
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+    +S  A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 481 CLQCYLXRASRHLHDPVSSKTTHS 552
           C QCYL    +++H+ + +K+T +
Sbjct: 292 CYQCYLISVGQNVHEYLRAKSTET 315


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 202 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 113
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 182 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 84
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 132 QPDSMATITMKPEYPPSEVYSTSEPP 209
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 266 NSGRF-LLHLGNLYIGFELGSSSFIMPSARAAGCNARQRTRFGRQSL 403
           NS R  +L L  LY+GF    S  ++   +A     R++ RFG++ +
Sbjct: 6   NSPRLNILELVLLYVGFFSIGSLNLLQKRKATSDPYRRKNRFGKEPI 52


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 8   LS*VVRRPALQLRTSDTVRVTQRRAINKF 94
           L+ +++ PA++ + +DT  V + R +NKF
Sbjct: 253 LNEILKDPAVESKLADTKYVQEIRVLNKF 281


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 123 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR 221
           K    DS  + T       SE YSTS+ PP  R
Sbjct: 305 KRQSLDSETSETSSESESESEYYSTSKQPPVKR 337


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 162 KPEYPPSEVYSTSEPPPAYRHRVS 233
           K  Y P++  +T + PP Y H VS
Sbjct: 201 KGRYYPNKALATDKDPPLYLHIVS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,086
Number of Sequences: 5004
Number of extensions: 47956
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)