Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12d19
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 30 1.2
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 2.7
07_03_1450 + 26620178-26620456,26622122-26622775 29 3.6
12_02_1197 + 26915933-26916298 28 4.7
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 4.7
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 6.2
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 6.2
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 28 6.2
02_01_0051 - 385738-385968,386439-386864 27 8.2
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 30.3 bits (65), Expect = 1.2
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +2
Query: 185 SIQHIRTAT-GLSAQGVNF-GPDREDCSTNSGRFLLHLGNLYIGFELGSSSFIMPSARAA 358
+IQ +R G S G F G S+ SG+ L + G ++ SSS PS +A
Sbjct: 66 AIQEVRGVDEGGSGHGTGFDGLPLVSPSSKSGKLTSKLRQVTNGLKMKSSSRKAPSPQAQ 125
Query: 359 GCNARQRTRFGRQSLRK*CPGSG*AFATSKCPRFAWSTAHAVFS 490
R R R R G F T+K W+ F+
Sbjct: 126 QSAKRVRKRLDRTKSSAAVALKGLQFVTAKVGNDGWAAVEKRFN 169
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 159 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 245
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 129 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 239
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +3
Query: 189 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARSSCHQLEQLDAM 368
+S PPPAY H + A A TV G F+ A S QL + +++
Sbjct: 148 FSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALS-----EDNRQLRRRNSL 202
Query: 369 LDKELALEGRAYGNDAL 419
L ELA + Y ND +
Sbjct: 203 LLSELAHMKKLY-NDII 218
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 208 GGSDVLYTSEGGYSGFIVIVAIESGW 131
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 152 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 72
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -2
Query: 194 AVYF-RRRIFRLHSYCSHRVWLV 129
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 251 EDCSTNSGRFLLHLGNL 301
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 27.9 bits (59), Expect = 6.2
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Frame = +3
Query: 117 MEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR-HRVSTSVQIAKIAALTVVASSFIL 293
+ + + S+A++ +P E S S PPP R R S + + +TV++ S +
Sbjct: 148 VSQREEEKSLASVVKRPML-LDERRSLSPPPPQQRAPRFDLSPYLVLMLVVTVISFSLAI 206
Query: 294 GTFILASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDAL-VADEPLPLANAHALHGV 470
++ A+ SC + +D E +G+D + AD L + + +
Sbjct: 207 WQWMKATVLQEKIRSCCSVSTVDCKTTTEAFKINGQHGSDFINSADWNLASCSRMLVFAI 266
Query: 471 PPML 482
P L
Sbjct: 267 PVFL 270
>02_01_0051 - 385738-385968,386439-386864
Length = 218
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 132 QPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILG 296
QP + A PE PP + PPPA + + ++A A + + F+ G
Sbjct: 82 QPAAAAAAAEDPEKPPVQEADPPPPPPALVYS-AAGTKLAGAAECAICLAEFVDG 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,629
Number of Sequences: 37544
Number of extensions: 374445
Number of successful extensions: 1152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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