Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d11
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   3.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   3.8  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    25   6.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   8.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   8.7  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 56  FYSEFKNVLQVSFPETDGFSFQDIVF 133
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 213 LIYHVKIFYINYEQIIAICFYFGILMSFDFMYIYSYVSTV 332
           ++  ++IF IN++ I  I FY G    FD   I + +S +
Sbjct: 251 ILCFMQIFCINWDGIARIQFYLG---KFDISLIMALISAI 287


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 255 IIAICFYFGILMSFDFMY 308
           +IAIC   GIL++F  M+
Sbjct: 11  VIAICLILGILLAFILMF 28


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 181 NRQFQFCYPTSRVRCNENNILKR 113
           N  ++FC   SR   ++N +LKR
Sbjct: 776 NEIYEFCGTHSRAEVHKNEVLKR 798


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 174  NFSFAIQLLEYVVMKTIS*KENPSV-SGKETCKTFLNSL 61
            NF+ +I LLE  ++K++   + P V   K+ C T   S+
Sbjct: 3614 NFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSI 3652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,019
Number of Sequences: 5004
Number of extensions: 26797
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)