Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d11
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   4.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   4.4  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 172 FQFCYPTSRVRCNENNILKRKPICFGKRNL*DIFKFTIEIVHC 44
           F   Y TS V  ++ + L   P  FG     DI  F  +  HC
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHC 125


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   LASTYTAVTLKLCNAMDDFYSEFKN 76
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   LASTYTAVTLKLCNAMDDFYSEFKN 76
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,244
Number of Sequences: 438
Number of extensions: 1971
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)