Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d10
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   0.48 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   0.84 
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   3.4  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   4.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   7.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    24   7.8  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.3 bits (60), Expect = 0.48
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 197 WSNSFGKHFVCSNSWFHFIGSNVIRVEVVFNFLSGVNVLVFDS 69
           W  +F K F  S SWFH + +N  R+ V+ +F +     VF+S
Sbjct: 465 WKKAFYKTFYESRSWFHLV-TNFNRIWVI-HFTTYWYYTVFNS 505


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 197 WSNSFGKHFVCSNSWFHFIGSNVIRVEVV 111
           W+ +F K +  S SWFH I +N  R+ V+
Sbjct: 495 WNRAFYKTYYESRSWFHLI-TNFNRIWVI 522


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 262 FSLAAKSISRLDGPPASSKS 203
           FS+A K +S + GPP + K+
Sbjct: 220 FSIAVKELSLIHGPPGTGKT 239


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 250 AKSISRLDGPPASSKSIYGPTPSGNISSAAIVG 152
           A+SI+R +   AS   IY P+   ++S  A+VG
Sbjct: 71  ARSITRPES--ASESKIYAPSARSSLSLEAVVG 101


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 220 PASSKSI-YGPTPSGNISS 167
           PASS ++ YGPT S  ISS
Sbjct: 66  PASSMNLSYGPTKSATISS 84


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 194 SNSFGKHFVC-SNSWFHFIGSNVIRVEVVFN 105
           S+SF  H++  SNSW + +G +    EV+ N
Sbjct: 559 SSSFFDHYMSKSNSWVNRLGIDSSASEVIVN 589


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 217 ASSKSIYGPTPSGNISSAA 161
           AS   I GP PSGN+ S A
Sbjct: 172 ASLAQIPGPLPSGNVPSPA 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,160
Number of Sequences: 5004
Number of extensions: 25437
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)