Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d08
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.2  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   4.2  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    25   5.5  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   5.5  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   5.5  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   9.6  

>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 332 AAPISKPGTTAKTTHSKP 279
           A P +KPG TA TT S+P
Sbjct: 397 ADPSAKPGATASTTPSEP 414


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 265 QKQPFGLLCVVFAVV 309
           ++ PFG+LC++F V+
Sbjct: 609 ERYPFGILCIIFTVL 623


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 172 VAQSKTLTKHEPIIHLRTATTTPTGAILPEPQK 270
           VA+  T+      +H+ +A++ P  +++PEP K
Sbjct: 228 VARKVTILSRIAGVHVESASSFPVKSLIPEPLK 260


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 491 LINIMGYYFFGTVQEEKRNLI 429
           +I+IMG YFFG +++   +L+
Sbjct: 168 IIDIMGTYFFGILRDHPSDLL 188


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 208 SVRVSLKSWTVPQDELV*KSPF 143
           SVR+ L  W++  DELV  +PF
Sbjct: 84  SVRIPLGYWSLGNDELVKGTPF 105


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 261 TTKTTFWFAVCCFCCRTGLTNRSCY 335
           T K   +FA+   C +  L N +CY
Sbjct: 16  TLKNLIFFAISTLCYKRALFNENCY 40


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 204 TDYTSKNCNYYSNWCYFTR 260
           T +TSKN +++S   +FTR
Sbjct: 214 THFTSKNYSFFSEGLWFTR 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,323
Number of Sequences: 5004
Number of extensions: 42927
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)