Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d08
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204           30   1.4  
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    27   9.8  

>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
          Length = 403

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 232 TTPTGAILPEPQKQPFGLLCVVFAVVPGLLIGAAISK 342
           T     ++ +    PFGL+C++F +  G+L   +++K
Sbjct: 326 TVAINVLIWDKHSSPFGLICLLFTIAGGVLYQQSVTK 362


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 474 PHDIN*ICFSVVFALXLNKIYPN 542
           PH++N +   V F L L+K++PN
Sbjct: 248 PHELNPLSDEVSFHLFLSKVFPN 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,135
Number of Sequences: 37544
Number of extensions: 235557
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)