Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d08
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-8|CAB54233.1|   90|Caenorhabditis elegans Hypothetical pr...    41   5e-04
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    29   1.7  
Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z78542-8|CAB54233.1|   90|Caenorhabditis elegans Hypothetical
           protein F20D1.10 protein.
          Length = 90

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 229 TTTPTGAILPEPQKQPFGLLCVVFAVVPGLLIGAAISKNIANFLEENELFVPS 387
           T T  G +   P     G+L ++F     L IG  I+   A++LEENE+FVP+
Sbjct: 32  TATAPGGVGQRPFTNKAGVLKLIFVSASSLYIGGLIAHKGASYLEENEIFVPT 84


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 263 GSGKIAPVGVVVAVLRCIIGSCFVKVLDCATRRVSLKIAI----SKKSRFSSSLRNRTQA 96
           G G I PVG +   L C++G         A  ++S+ + +      K++ ++ LRN   +
Sbjct: 292 GYGDIYPVGALTKFLVCVLGFIAFCTFQAANTQISVGLTLMMEEENKNQQTNRLRNLAAS 351

Query: 95  TLE 87
           T++
Sbjct: 352 TIQ 354


>Z72511-5|CAD89724.1|  314|Caenorhabditis elegans Hypothetical
           protein F55A11.11 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 286 LCVVFAVVPGLLIGAAISKNIAN 354
           +CV+F   P L+IG A++ ++A+
Sbjct: 210 ICVIFRDTPALIIGHAVTMDVAS 232


>AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical
           protein C24G6.3 protein.
          Length = 922

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 118 EEEKRDFLEMAIFRLTRLVAQSKTLTKHEPII 213
           +EE  D L + I    R  AQ K L+  EP+I
Sbjct: 256 DEEYEDVLNLLILAYNRFPAQKKNLSLIEPLI 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,024,629
Number of Sequences: 27780
Number of extensions: 242039
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)