Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d08
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   8.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 209 IGSCFVKVLDCATRRVSLKIAISKK 135
           I + +  VLDC T  ++ K A  K+
Sbjct: 353 ISNGYTPVLDCHTAHIACKFAEIKE 377


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 209 IGSCFVKVLDCATRRVSLKIAISKK 135
           I + +  VLDC T  ++ K A  K+
Sbjct: 64  ISNGYTPVLDCHTAHIACKFAEIKE 88


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 332 AAPISKPGTTAKTTHSK 282
           A+P ++P TT  TT S+
Sbjct: 384 ASPTTEPSTTTSTTISQ 400


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 209 IGSCFVKVLDCATRRVSLKIAISKK 135
           I + +  VLDC T  ++ K A  K+
Sbjct: 353 ISNGYTPVLDCHTAHIACKFADIKE 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,955
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)