Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d06
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   3.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    24   4.6  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      23   6.1  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    23   6.1  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    23   6.1  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   8.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    23   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 71   PVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFSIA 187
            PV  P  G    PPP    P PK  P +  P  P  S A
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPK--PSVGVPPVPPPSTA 1216


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = +2

Query: 32  IPSWTELKREKKQPVVCPKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFSIASLFYHVLF 211
           IP  T+L  +   P+V P D  +   P          +P  +F   P  S      H L 
Sbjct: 144 IPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSSPLKDFQSSPPLSTVLQKSHSLH 203

Query: 212 GSIL 223
             +L
Sbjct: 204 DILL 207


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 71  PVVCPKDGCKQTPPPKLTDP 130
           P+V P    KQTP   +T+P
Sbjct: 100 PIVSPTTSPKQTPSINVTEP 119


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 155 NFPIRPNFSIASLFYHVLFGSILT 226
           N+P RP      +  H LF S +T
Sbjct: 83  NYPNRPTLDERDILRHYLFSSAIT 106


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 47  ELKREKKQPV---VCPKDGCKQTPPPKLTDPCPK 139
           E K++KKQ     +C K+ CK+ P    +D   K
Sbjct: 300 EEKQDKKQSTNRDLCRKESCKKEPSLSSSDQVTK 333


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 174 FGRIGKFRHGFP 139
           F RI +F+HGFP
Sbjct: 539 FERIEEFKHGFP 550


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 145 SMPELSNSTELFDC*FILSRFIWKYFDA 228
           S+P     T+  DC F+   F++ YF +
Sbjct: 356 SIPGHGGLTDRMDCQFLNGVFVYMYFQS 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,139,544
Number of Sequences: 5004
Number of extensions: 21321
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)