Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d06
         (275 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   4.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   4.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   6.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 83  PKDGCKQTPPPKLTDPCPKGNPCLNFPIRPNFSIASLFYHVLFGSIL 223
           P DG    P P L  P   G P   + +R  F+     Y   FG IL
Sbjct: 309 PSDGATSEPFPFLMLPLGAGRPAF-WSLRKAFARKKTDYS-SFGKIL 353


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 43  PRRYRYPGIKISSQ 2
           PR Y YP I IS +
Sbjct: 523 PRNYMYPNIDISPE 536


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 109  WRLLAAIFRTDDRLLLLP 56
            W++  A+ ++ DRL  LP
Sbjct: 1310 WKVRGAVLQSSDRLRQLP 1327


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 80   CPKDGCKQTPPPKLTDPCP 136
            C   G  Q+  P +TDP P
Sbjct: 973  CQPGGVVQSQQPIMTDPSP 991


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 87  LGQTTGCFFSLFNSVHDGIGTQGSKFRA 4
           LG T   F    +++HD +GT     RA
Sbjct: 90  LGATPRDFLQNLDALHDHLGTLYPGMRA 117


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 87  LGQTTGCFFSLFNSVHDGIGTQGSKFRA 4
           LG T   F    +++HD +GT     RA
Sbjct: 90  LGATPRDFLQNLDALHDHLGTLYPGMRA 117


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -1

Query: 194 IN*QSKSSVELESSGMDFLWGTGRLVWEVA 105
           IN   K+ +   +  + F+W   +L W+ A
Sbjct: 64  INVNEKNQIMKSNVWLRFIWTDYQLQWDEA 93


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 14  FDPWVPIPSWTELKR 58
           FDP+V  P+  EL++
Sbjct: 234 FDPYVKTPNDEELEK 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,026
Number of Sequences: 438
Number of extensions: 1892
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)