Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d05
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0554 - 7139623-7140390                                           28   4.6  
01_05_0475 - 22571571-22572466,22572626-22572947                       28   4.6  
11_06_0594 + 25349612-25352530                                         28   6.1  

>04_01_0554 - 7139623-7140390
          Length = 255

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 296 SWNIQVRVQSRNISSGKPPMSRREIGMVHRXIKYNRP 406
           SW+++  VQ R+I S   P  R+    ++R +++ RP
Sbjct: 75  SWHVRGGVQQRDIKSHSQPDVRQIERWINRGVRFYRP 111


>01_05_0475 - 22571571-22572466,22572626-22572947
          Length = 405

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 165 EIHPSIG--EIRKKLQVKHIEEQELIKIREVIALCCNQIKKCVVNLLG 302
           E+ P IG  EI KK  V+H+  +E++K +    +C N     + NLLG
Sbjct: 108 EVLPIIGPQEIGKKTLVEHVLNEEMVKRKFSCIICLN--SDGLRNLLG 153


>11_06_0594 + 25349612-25352530
          Length = 972

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 225 QELIKIREVIALCCNQIKKCVVNLLGIFKLE--YNQGIFLQESRQCHVERLEWCIDXLN 395
           Q+++++ ++  LC  ++   +  L+GI +L      G+ LQ +  C+++ L   ID L+
Sbjct: 722 QKIVRMGKLEILCYAEVSSGLTGLMGICQLRRLRKLGVLLQGNAACNLDYLFRQIDMLD 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,805,431
Number of Sequences: 37544
Number of extensions: 207188
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)