Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d05
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z73426-2|CAA97794.1|  119|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical...    29   3.1  
Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    28   5.5  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    28   5.5  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    28   5.5  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    28   5.5  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    28   5.5  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    28   5.5  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    28   5.5  
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    27   7.2  
AF125952-2|AAD14700.1|  478|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC006722-8|AAK68418.2|  478|Caenorhabditis elegans Hypothetical ...    27   7.2  
U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophil...    27   9.5  

>Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical
           protein R05D7.4 protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +3

Query: 210 KHIEEQELIKIREVIALCCNQIKKCVVNL-LGIFKLEYNQGIF--LQESRQCHVERLEWC 380
           +H+E +ELIK    + LC  + K+ + +L   I  L   Q I   LQ S + +  ++EW 
Sbjct: 159 RHLEFRELIKTMRNVDLCRTR-KEILKDLESAIPDLAMRQFILTNLQPSSE-NEGQMEWK 216

Query: 381 IDXLNTIDQHLEK 419
           I+ +NTID H+++
Sbjct: 217 IN-INTIDSHVDE 228


>Z73426-2|CAA97794.1|  119|Caenorhabditis elegans Hypothetical
           protein F40F11.3 protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +3

Query: 177 SIGEIRKKLQVKHIEEQELIKIREVIALCCNQIKKCVVNLLGIFKLEYNQGIFLQESRQC 356
           +I  ++    V  IE + L+K+ E+IA   N  ++ +   +  F  E N  +    +RQ 
Sbjct: 32  AIEHVKDSKLVHRIENEMLVKVDEIIASSANLTQEEIQRKMKDFMNE-NAKMRNDINRQI 90

Query: 357 HVE-RLEWCIDXLN-TIDQHLEKR 422
            VE   EW  D L+  ID+ + K+
Sbjct: 91  RVEFEKEWVHDELDKEIDEKVNKQ 114


>AL031630-10|CAA20990.1|  363|Caenorhabditis elegans Hypothetical
           protein Y38H6C.11 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 201 LQVKHIEEQELI-KIREVIALCCNQIKKCVVNLLGIFKLEYNQGIFLQ 341
           L +  +E+ E+I K RE+   C     K +  LL  F++EY + I ++
Sbjct: 150 LLISELEKSEIIIKAREIAIDCNESTSKWIQKLLSRFEMEYLEKITMK 197


>Z81470-3|CAB03880.1|  401|Caenorhabditis elegans Hypothetical
           protein C14A6.3 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 246 EVIALCCNQIKKCVVNLLGIFKL 314
           E I LCCN I +  VNL  I +L
Sbjct: 243 EKITLCCNSIPEITVNLTSILEL 265


>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 51  KTIERN*ENNEHKMHKIKFELPDNSGESTKY 143
           + +E+N E N+  + KI+ ELP+ S + T Y
Sbjct: 363 RKLEQNIEENKSMIAKIEMELPNQSTKYTMY 393


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 51  KTIERN*ENNEHKMHKIKFELPDNSGESTKY 143
           + +E+N E N+  + KI+ ELP+ S + T Y
Sbjct: 363 RKLEQNIEENKSMIAKIEMELPNQSTKYTMY 393


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 360 VERLEWCIDXLNTIDQH 410
           +E L+WC+D L TI  H
Sbjct: 90  LEELDWCLDQLETIQTH 106


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 360 VERLEWCIDXLNTIDQH 410
           +E L+WC+D L TI  H
Sbjct: 215 LEELDWCLDQLETIQTH 231


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 360 VERLEWCIDXLNTIDQH 410
           +E L+WC+D L TI  H
Sbjct: 140 LEELDWCLDQLETIQTH 156


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 360 VERLEWCIDXLNTIDQH 410
           +E L+WC+D L TI  H
Sbjct: 153 LEELDWCLDQLETIQTH 169


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 360 VERLEWCIDXLNTIDQH 410
           +E L+WC+D L TI  H
Sbjct: 167 LEELDWCLDQLETIQTH 183


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 360 VERLEWCIDXLNTIDQH 410
           +E L+WC+D L TI  H
Sbjct: 214 LEELDWCLDQLETIQTH 230


>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/50 (24%), Positives = 29/50 (58%)
 Frame = +3

Query: 144 LITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIALCCNQIKKCVVN 293
           +++LL +E+     +   + + +H+++Q   + +EV  LC + ++KC  N
Sbjct: 169 ILSLLSEEVFDFGSQNLTQAKEQHLKQQFCGQFQEVFTLCVSILEKCPSN 218


>AF125952-2|AAD14700.1|  478|Caenorhabditis elegans Hypothetical
           protein C01B4.8 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 529 SDNFDKTSNVWSIQFTKY--IVVTLIESSVLSLDKLLFLFS-RCWSIVFNXSMHHSNLST 359
           S+N  KTS +     T+Y  +++TL   ++L ++ L F F+  C S V +   H ++ + 
Sbjct: 18  SENSRKTSKILCCNLTRYLILILTLTCLTLLQMNSLAFNFTVICMSDV-SDDYHITHPNE 76

Query: 358 *HW 350
            HW
Sbjct: 77  THW 79


>AC006722-8|AAK68418.2|  478|Caenorhabditis elegans Hypothetical
           protein Y19D10A.5 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 529 SDNFDKTSNVWSIQFTKY--IVVTLIESSVLSLDKLLFLFS-RCWSIVFNXSMHHSNLST 359
           S+N  KTS +     T+Y  +++TL   ++L ++ L F F+  C S V +   H ++ + 
Sbjct: 18  SENSRKTSKILCCNLTRYLILILTLTCLTLLQMNSLAFNFTVICMSDV-SDDYHITHPNE 76

Query: 358 *HW 350
            HW
Sbjct: 77  THW 79


>U80437-15|AAB37627.1|  445|Caenorhabditis elegans Mus (drosophila
           mutagen sensitive)related protein 81, isoform a protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 195 KKLQVKHIEEQELIKIREVIALCCNQIKKCVVNLLGIFKLEYNQGI 332
           K L+ +H +EQE  K++ V+      ++KC   +L I  L+  QGI
Sbjct: 22  KVLKFQH-QEQEDRKLKYVLHKAHENLRKCPFEILTIVDLKNVQGI 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,385,425
Number of Sequences: 27780
Number of extensions: 221706
Number of successful extensions: 615
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)