Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d04
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.1  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   2.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   3.4  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 177 MPKARHLTFTVTFMKSCATDQPTASV 100
           MP+AR +T  + F  +     P+ASV
Sbjct: 1   MPRARLVTLWLAFNLASIAQDPSASV 26


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/29 (27%), Positives = 11/29 (37%)
 Frame = +1

Query: 106 CCGLIGCTTLHKRNRKREMTSFWHLSSVC 192
           CCG  GC        + +   F+H    C
Sbjct: 62  CCGPFGCLVGTPETLRCQREGFFHEREPC 90


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 157 HVYGYVYEELCNRSAHSISPIDND 86
           H YGY        S HS S I ND
Sbjct: 392 HQYGYNTLSPLPSSVHSHSTIGND 415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,079
Number of Sequences: 336
Number of extensions: 962
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)