Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d04
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   1.0  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   1.4  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   4.2  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    24   7.3  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    24   7.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    23   9.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   9.6  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 40  PSNANRSVMSLQPSYGHYQSD*CCGLIG 123
           P   N +VM +   YG   SD C GLIG
Sbjct: 256 PVPYNNTVMVMPNLYGDIVSDMCAGLIG 283


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 45   KCQSIGHEFATELRSL 92
            KCQS+  EF TELR L
Sbjct: 962  KCQSMEREFKTELRKL 977


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 249 IKSNYIRKKFKQ*SFNLDGTNRAQMPKARHL---TFTVTFMKSCATDQPTASVRLIMTVA 79
           ++ N  RK F +    L   +R ++   R+L    F  TF +S  T  P  S   ++T A
Sbjct: 313 LEDNSRRKWFIKRGIYLTLLDRCEIILWRNLFRKVFLFTFEQSQKT--PHVSGSYLLTAA 370

Query: 78  RLQTHDRS 55
           RL T+D S
Sbjct: 371 RLSTNDNS 378


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -1

Query: 145 YVYEELCNRSAHSISPIDNDRSSVANS*PIDWH 47
           Y+YE L N S  S+   +N         P  WH
Sbjct: 331 YIYESLVNYSRSSLPSAENWNVYSKKDIPSRWH 363


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 142 VYEELCNRSAHSISPID 92
           VY+E+C   A  ++P+D
Sbjct: 15  VYDEICKMKAKVVAPVD 31


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 154  VYGYVYEELCNRSAHSISPIDNDRSSVANS 65
            V  +VY+ L +  AH I+  D+    + N+
Sbjct: 1042 VLKFVYDNLASCLAHEINAADSSSEQICNA 1071


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 212  SHLILMVQTELRCQKLVIS 156
            SH+I ++   LRC KL ++
Sbjct: 2098 SHIIALIDKSLRCGKLPVT 2116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,126
Number of Sequences: 5004
Number of extensions: 15787
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)