Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d04
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0364 + 24726020-24726255,24726330-24726467,24727191-247276...    26   6.6  

>04_04_0364 +
           24726020-24726255,24726330-24726467,24727191-24727657,
           24727753-24728300
          Length = 462

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 198 DGTNRAQMPKARHLTFTVTF--MKSCA-TDQPTASVRLIMTVARLQTHDRSIG 49
           D T R ++   RH+ ++VTF   ++CA  ++   SV L   V  +QT   S G
Sbjct: 179 DATIRQRISVTRHMYYSVTFSAARTCAQAEKLNVSVTLEFGVLPIQTVYTSTG 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,751,029
Number of Sequences: 37544
Number of extensions: 97839
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)