Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d04
         (340 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    23   3.1  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            21   9.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            21   9.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    21   9.6  

>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 204 NLDGTNRAQMPKARHLTFTVTFMKSCATDQPTASVRLIMTVARL 73
           NLDG  +    + R L   +  +++     PTA  ++  T+ +L
Sbjct: 222 NLDGEFQIVTAELRKLALVIILIRAGLEMDPTAFKKIYKTILKL 265


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 165 ELLASELCLYHQ 200
           E   SELCL+HQ
Sbjct: 782 ERTQSELCLFHQ 793


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 165 ELLASELCLYHQ 200
           E   SELCL+HQ
Sbjct: 783 ERTQSELCLFHQ 794


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 71  KLMTDRLAFDGAFVAPGGCLS 9
           ++ T  +  DG  V PGG LS
Sbjct: 642 RIKTRSVTLDGDVVDPGGTLS 662


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,312
Number of Sequences: 2352
Number of extensions: 4007
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 24206952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)