Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12d03
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   7.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.5  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   7.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 212 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 295
           G+G +H    Y+ Y   HA +  DLAG+
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGR 183


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 528 NLIWIWIHQRRNRRCTGLGN 587
           N++W+W+ +  N R   +GN
Sbjct: 417 NILWLWLFRMLNLRIASMGN 436


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 452 FENTCISAYCTQTHPPLQRTSPLPIKPDMDMDTPEKKPAM-HRSWQLMT 595
           F  T +    T+ + PL+ TSP    P    D+P K P   H ++  +T
Sbjct: 170 FSPTSVERRFTEWNVPLRETSP---SPSETADSPNKLPKQKHPAYSFVT 215


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 NIKFVSCTASSYACCNPKYWVRKHMYFRLLYAN 489
           N+K++SCT    +  +P     KH+    L+AN
Sbjct: 707 NLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHAN 739


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 611 KFVPAXSLIAKTCASPVSSLVYPYPYQVLL 522
           K+V A  L++  C+  +SSL+Y   Y VLL
Sbjct: 172 KWVRASILLSVACSVKMSSLLYVPAYLVLL 201


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 233 YTEY-KKYQTMHAQLTKDLAGKINESAKDSEKAEGL 337
           Y E+  KY + + +L+K + G I E ++  EKA  L
Sbjct: 109 YDEFCSKYLSKYMELSKKIGGLIAEQSEHVEKAFNL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,327
Number of Sequences: 5004
Number of extensions: 53337
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)