Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c24
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    23   4.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    23   7.4  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    23   7.4  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    22   9.7  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 4   KILFFNDENXINLNKIYN 57
           KI++ +DE  + LNKI++
Sbjct: 538 KIIYLDDERVVLLNKIFS 555


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 82   ILIIYLFVNLVAVVKITNIFYGPLRSSN 165
            I+ +Y+FVN+   V   N  Y   +SS+
Sbjct: 1491 IISMYIFVNMFITVVFDNFSYIHTKSSS 1518


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 16  FNDENXINLNKIYNNQ-TSFLTIILIIYLFVNLVAVVKITNIFYGPL 153
           F D+  IN ++ +     SFL+I  +   F+N +   +  N  Y  L
Sbjct: 73  FVDKQSINTSRSWFRAFLSFLSICFLFISFLNFIFSTRFQNKLYRTL 119


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 43  NKIYNNQTSFLTIILIIYLFVNLVAVVKITNIFYGP 150
           N +    T F T I I    +NL     IT  F+GP
Sbjct: 532 NILVRELTDFTTGIYINESKINLDVAACITGNFFGP 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,228
Number of Sequences: 5004
Number of extensions: 3107
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)