Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c24
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     26   4.8  
08_02_0378 + 16496197-16496386,16496929-16497007,16497201-164973...    25   8.5  
08_02_0372 - 16381571-16381721,16381915-16381993,16382535-16382724     25   8.5  

>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 64  TSFLTIILIIYLFVNLVAVVKITNIFYGPL 153
           T+FL+ I+ +Y F++ V  + I N    PL
Sbjct: 392 TNFLSSIIFLYFFIDAVVDILIVNKDAAPL 421


>08_02_0378 +
           16496197-16496386,16496929-16497007,16497201-16497300,
           16499446-16499492,16499583-16499703,16500022-16500108,
           16500401-16500484,16500649-16500702,16501575-16501619,
           16502076-16502156,16502557-16502602,16502696-16502748
          Length = 328

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 85  LIIYLFVNLVAVVKITNIFYGPL 153
           +IIY+F+N+  ++K+    + P+
Sbjct: 72  IIIYIFINVFTIIKLDQQRFAPI 94


>08_02_0372 - 16381571-16381721,16381915-16381993,16382535-16382724
          Length = 139

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 85  LIIYLFVNLVAVVKITNIFYGPL 153
           +IIY+F+N+  ++K+    + P+
Sbjct: 72  IIIYIFINVFTIIKLDQQRFAPI 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,530
Number of Sequences: 37544
Number of extensions: 12075
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)