Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c24
         (197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-6|AAL65771.1|  106|Caenorhabditis elegans Hypothetical pr...    30   0.20 
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    27   2.4  
X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic acety...    25   7.4  
U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine r...    25   7.4  

>U50312-6|AAL65771.1|  106|Caenorhabditis elegans Hypothetical
           protein B0222.10 protein.
          Length = 106

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +1

Query: 34  INLNKIYNNQTSFLTIILIIYLFVNLVAVVKITNIFYGPLRSSN 165
           I++N ++NN   F+T +L+I+L++ L+  V      +GPLR S+
Sbjct: 52  IHIN-LFNN---FVTFLLVIFLYIFLIYYVTFFVFPFGPLRVSH 91


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 49  IYNNQTSFLTIILIIYLFVNLVAVVKITNIFYGPL 153
           I++N    LTIIL I +FV L    KIT+    P+
Sbjct: 209 IFSNTNITLTIILTIMMFVKLYHKRKITSELRRPV 243


>X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 575

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 25  ENXINLNKIYNNQTSFLTIILIIYLFVNLVAVVKITNIFYGPLRSSNK 168
           EN +  N +   +T F T+ILII     L+A + +   FY P+ S  K
Sbjct: 252 ENKMVFNVVIRRKTLFYTVILIIPTV--LMAFLSVM-AFYLPVDSGEK 296


>U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine
           receptor protein 2 protein.
          Length = 575

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 25  ENXINLNKIYNNQTSFLTIILIIYLFVNLVAVVKITNIFYGPLRSSNK 168
           EN +  N +   +T F T+ILII     L+A + +   FY P+ S  K
Sbjct: 252 ENKMVFNVVIRRKTLFYTVILIIPTV--LMAFLSVM-AFYLPVDSGEK 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,128
Number of Sequences: 27780
Number of extensions: 16720
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)