Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c24
(197 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 24 0.15
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 24 0.15
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 2.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 2.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 2.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 2.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 2.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 2.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 2.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 2.4
AJ555537-1|CAD88245.1| 210|Apis mellifera putative chemosensory... 19 4.3
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 19 7.5
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 24.2 bits (50), Expect = 0.15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 1 TKILFFNDENXINLNKIYNNQTSFLTIILI 90
TKI+ N+ N N N YN++ + II I
Sbjct: 301 TKIISSNNYNYKNYNNNYNSKKLYYNIINI 330
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 0.15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 1 TKILFFNDENXINLNKIYNNQTSFLTIILI 90
TKI+ N+ N N N YN++ + II I
Sbjct: 312 TKIISSNNYNYKNYNNNYNSKKLYYNIINI 341
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 230 VTILLSLTVFLNLVA 244
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 230 VTILLSLTVFLNLVA 244
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 230 VTILLSLTVFLNLVA 244
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 230 VTILLSLTVFLNLVA 244
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 230 VTILLSLTVFLNLVA 244
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 230 VTILLSLTVFLNLVA 244
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 298 VTILLSLTVFLNLVA 312
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 2.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 73 LTIILIIYLFVNLVA 117
+TI+L + +F+NLVA
Sbjct: 298 VTILLSLTVFLNLVA 312
>AJ555537-1|CAD88245.1| 210|Apis mellifera putative chemosensory
receptor 2 protein.
Length = 210
Score = 19.4 bits (38), Expect = 4.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 34 INLNKIYNNQTSFLT 78
++L IY+N+T F T
Sbjct: 58 MDLRGIYSNRTDFTT 72
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 18.6 bits (36), Expect = 7.5
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 85 LIIYLFVNLVAVVKITNIFYGPLRSSN 165
+++Y+F++ ++ +N+F L SN
Sbjct: 72 MVVYIFLSTKSLRTPSNLFVINLAISN 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,757
Number of Sequences: 438
Number of extensions: 268
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used: 2668491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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