Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c22
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.081
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    24   1.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    24   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 215  RPASTAASLSTGPSLSEEAVTELTVGYISR-ILTIGGVSHDGGCCAAQDTTT 367
            RPAS A S+   P  S  A++E +   +S   L    VS+DGGC +  D +T
Sbjct: 886  RPASQATSVKAEPG-SIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVDVST 936


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 391 LGRRLPSSSCCVLRGAAP 338
           +GRRL S +  VLRGA P
Sbjct: 64  VGRRLKSLAPLVLRGACP 81


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 391 LGRRLPSSSCCVLRGAAP 338
           +GRRL S +  VLRGA P
Sbjct: 64  VGRRLKSLAPLVLRGACP 81


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 441  GGGDGERAVALYMACKHLPAAVLAA 515
            GGG+ E  + ++MA  +L   V+AA
Sbjct: 1570 GGGNDEDPMKIFMANLNLVVPVVAA 1594


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 360 VSCAAQHPPSCDTPP 316
           +SC A  PP   TPP
Sbjct: 387 MSCVACSPPPRQTPP 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,171
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)