Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c20
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    31   0.46 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   0.46 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   0.46 
AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical ...    29   1.9  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 151  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 62
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8632 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8661


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 151  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 62
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 151  DLVFGGHFLQTEPFILLNFYDYDNVNLVLF 62
            D+  G   + T+  + LNFYDYD + L +F
Sbjct: 8652 DIEAGEESIHTDALVDLNFYDYDQMELSIF 8681


>AF025470-3|AAB71057.1|  394|Caenorhabditis elegans Hypothetical
           protein W10D9.3 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = -2

Query: 410 ESSISFPVFWYRRLQRTMSNIP*SRMHRRNHWNTAFFIMWRFKFFHFKLRRSR 252
           ++S+ F V   R++++   ++   + +  N WN   F+M   KF +++  RS+
Sbjct: 125 DNSMDFFVEIQRKMKKFDKSVSLEKKYMENDWNCFDFVMEYMKFTNYRNYRSK 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,552
Number of Sequences: 27780
Number of extensions: 196244
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)