Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c19
         (432 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    25   0.31 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   8.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   8.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           20   8.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   8.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   8.8  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 249 LVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPPSDMVE 365
           L IG+A++  +F ++    S +   SP + P PP D  E
Sbjct: 250 LAIGIAFYGHAFTLV--DASQHDLGSPSSGPAPPGDFTE 286


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 337 NPVHQATWLKNVRILNH 387
           NP+   +WLK+   ++H
Sbjct: 354 NPIKTISWLKDGHPIDH 370


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 345 PPSDMVEECEDIEP 386
           PP+ ++ + +DI+P
Sbjct: 536 PPAPLISQYDDIDP 549


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 255 SPEPCYNSFACL 220
           SP PC N+ +C+
Sbjct: 111 SPNPCRNNGSCV 122


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 135 RQYSSKPDRCDAHMNELPVP 194
           R Y++ PD+  ++   LP P
Sbjct: 175 RYYNNSPDQYQSYQILLPTP 194


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 203 WSTRYWKLIHMGV 165
           WS+ YW L+ + V
Sbjct: 917 WSSFYWNLLPIAV 929


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 203 WSTRYWKLIHMGV 165
           WS+ YW L+ + V
Sbjct: 917 WSSFYWNLLPIAV 929


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,798
Number of Sequences: 336
Number of extensions: 2311
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)