Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c19
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838...    29   2.1  
12_01_0002 - 4477-6144,6571-7440                                       27   4.9  
11_01_0003 - 6099-7766,8193-9062                                       27   4.9  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           27   8.6  
07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705     27   8.6  
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272...    27   8.6  

>10_08_0491 -
           18283404-18283482,18283590-18283658,18283767-18283883,
           18283953-18284068,18284149-18284223,18284248-18284430,
           18284530-18284591,18284668-18285606,18285723-18285846,
           18285917-18286060,18286151-18286225,18286359-18286382,
           18287025-18287095,18287305-18287407,18287555-18287781,
           18287910-18288027,18288220-18288311,18288793-18288874
          Length = 899

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 225 CLCTTAPMVHTVLEAHSYGRHIDQALTNIVSYLSIF 118
           C C   P+  +VLE  SY RH+  AL  I+  +  F
Sbjct: 794 CTCVL-PLASSVLEKSSYDRHLKVALEMILKLVKSF 828


>12_01_0002 - 4477-6144,6571-7440
          Length = 845

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 175 IWASHRSGFDEYCLLFKHILTLNVFAVKVFFALKIVALSI-LGNL 44
           +W +HR+G  E  L    ++ L+ FAV V  +   VA  I LG +
Sbjct: 116 LWLAHRTGAGESVLATTAVVALSTFAVAVAGSAGTVAKRIALGQI 160


>11_01_0003 - 6099-7766,8193-9062
          Length = 845

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 175 IWASHRSGFDEYCLLFKHILTLNVFAVKVFFALKIVALSI-LGNL 44
           +W +HR+G  E  L    ++ L+ FAV V  +   VA  I LG +
Sbjct: 116 LWLAHRTGAGESVLATTAVVALSTFAVAVAGSAGTVAKRIALGQI 160


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 210  PWYKDMQSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPG 344
            P+ K +   + K  V+ + W+AF+F   + T  LY+N      PG
Sbjct: 884  PFAKGILGKHGKTPVVVLVWWAFTF---VITAVLYINIPHIHGPG 925


>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
          Length = 835

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = -1

Query: 315 STNFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRHIDQALTNIV 136
           S N P ++ CR+R   +   +    Y   A       ++  +  +H    HI +  +  V
Sbjct: 568 SRNCPLLAGCRLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYV 627

Query: 135 SYL 127
           +YL
Sbjct: 628 AYL 630


>07_01_0365 +
           2718707-2718839,2719335-2719405,2719512-2719955,
           2720660-2721802
          Length = 596

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 228 QSYYNKVLVIGVAWFAFSFGMMIYTESLYLNFSPPAQPGPPSDMVEE-CEDIEP*MRYW 401
           QS+ +    IG AW    FG +      ++    P   G P + VE+  E  E  +R+W
Sbjct: 517 QSFLSLTDAIGAAWTFLIFGGLSVAALAFVLVCVPETKGLPIEEVEKMLEGRELRLRFW 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,951
Number of Sequences: 37544
Number of extensions: 220455
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)