Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c19
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)                     32   0.17 
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   30   0.71 
SB_8176| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)                  29   1.2  
SB_19900| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_47044| Best HMM Match : UPF0153 (HMM E-Value=2.9e-07)               28   2.8  
SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)          28   3.8  
SB_38005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_22263| Best HMM Match : LicD (HMM E-Value=5e-06)                    27   8.7  

>SB_7976| Best HMM Match : ShTK (HMM E-Value=0.001)
          Length = 277

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -1

Query: 348 VDRVGLVARNLSTNFPCISSCRMRKQTKQRQSPEP 244
           V R GL  +    +F CIS+C   K  KQR+ PEP
Sbjct: 101 VSRKGLKTKAARVSFDCISNC-SEKAIKQRRLPEP 134


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 39  YYKFPKMLRATILRAKKTFTANTLR--VKICLNKRQYSSKPDRCDAHMNELPVPCG 200
           Y + P +   T +   K+ + N  R   K+CL+   Y  KP RC+ H  ++ + CG
Sbjct: 634 YERTPVLALHTKIARAKSKSENWCRDYEKLCLS---YGRKPARCEMHTKDVQLKCG 686


>SB_8176| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)
          Length = 364

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 139 CLLFKHILTLNVFAVKVFFALKIVALSILGNL*YLLTSFFDLMXRC 2
           C+L   +LTL  F  + F+ LK   + +L N+ Y + +FF     C
Sbjct: 221 CMLAALLLTLCWFPTETFWILKQYKVVVLPNVWYWVFNFFAFFNSC 266


>SB_19900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 139 CLLFKHILTLNVFAVKVFFALKIVALSILGNL*YLLTSFFDLMXRC 2
           C+L   +LTL  F  + F+ LK   + +L N+ Y + +FF     C
Sbjct: 221 CMLAALLLTLCWFPTETFWILKQYKVVVLPNVWYWVFNFFAFFNSC 266


>SB_47044| Best HMM Match : UPF0153 (HMM E-Value=2.9e-07)
          Length = 237

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 386 WFNILTFFNHVAWWTGLGWWR 324
           W  + T  NH   WT   WWR
Sbjct: 76  WLLLATTLNHCLAWTAQPWWR 96


>SB_12889| Best HMM Match : Peptidase_S9 (HMM E-Value=1.4e-38)
          Length = 253

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 309 NFPCISSCRMRKQTKQRQSPEPCYNSFACLCTTAPMVHTVLEAHSYGRH 163
           +F  I+  +    ++  Q P PCY    C      +V T L A  YG H
Sbjct: 194 SFKFIAELQHVMGSQDNQCPIPCYGHAQCRYFVRVLVITRLHAMLYGAH 242


>SB_38005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 340 GWAGGEKFKYKLSVYIIMPNEKANQATPITR 248
           G+      KY+L  YI+ PN+  N+ TP+ R
Sbjct: 59  GYPESHNNKYELQSYIL-PNQPINEKTPLHR 88


>SB_22263| Best HMM Match : LicD (HMM E-Value=5e-06)
          Length = 374

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 189 VPCGPWEPWYKDMQSYYNKVLVIGVAWFAFSFGMMI 296
           VP  PW P  +D QS Y   L       A+  G+M+
Sbjct: 241 VPGAPWNPRLRDTQSCYKWCLTFQHKQCAWHDGLML 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,575
Number of Sequences: 59808
Number of extensions: 259618
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)