Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c18
(543 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 30 0.25
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 27 2.4
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 3.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 3.1
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 26 4.1
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 25 7.2
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 7.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 7.2
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 25 7.2
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 432 LYKTNKPNTAKTVWMHVFIEKDKEIDFDE 518
LYKT + KT W V I KD EID +
Sbjct: 111 LYKTKECTFCKTEWDTVLITKDHEIDIHD 139
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 228 NRIKVNLKGAAAIIKHWP 281
+R+KVN KG ++K WP
Sbjct: 69 HRLKVNDKGGMTVVKSWP 86
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 168 LSEEDQSIPRHYRRRSFSNRNRIKVNLK 251
LSEED+ + RRR F N +R + N K
Sbjct: 92 LSEEDEVDKKEKRRRRFENGSRSQNNAK 119
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 191 STSLPTPFLFEQKSYQSKSERSRCYY*TLARSLDQICSVL 310
S+S+P P L QSK E S Y T S D +VL
Sbjct: 954 SSSIPGPVLLASLKSQSKDEYSVLLYGTEVSSSDTYLNVL 993
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 231 DFCSKRNGVGNDVESTDLPQRVRHA 157
DFCS G N T P + RHA
Sbjct: 352 DFCSNFKGKNNSSSITSSPSKSRHA 376
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 393 QLKPVTNQIFDTGLYKTNKPNT 458
+L P +QIFD G+ T PNT
Sbjct: 508 KLLPSESQIFDEGIAVTQTPNT 529
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/41 (24%), Positives = 25/41 (60%)
Frame = -3
Query: 379 NVKIKKLLYIINVVMVIIPSPIHQYATNLVQ*SGQCLIIAA 257
N K++ + I +V++ +PS +++ +NLV+ C+ ++
Sbjct: 234 NFKLEDVAPISDVIICGVPSANYKFPSNLVRDGAVCICFSS 274
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 7.2
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +3
Query: 276 WPDHWTRFVAY----WWIGLGMITITTFIIYNSFFILTLMPEAQLKPVTNQIFDTGLYKT 443
W D FV Y W I + +T FI+ F L P A++ ++F + KT
Sbjct: 254 WHDSDAGFVFYMLHHWAIFTFLGFLTFFIVVYFIFGYALKPAARVSRTGRRVFSSPFSKT 313
Query: 444 NKPNTAKTVWMHVFIEKDKEID 509
+ P+ K H F +++ D
Sbjct: 314 S-PSRWKI--FHRFTSSNEKYD 332
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Frame = +3
Query: 288 WTRFVAYWWIGLGMITITTFII------YNSFFI 371
W + YWW+ + + + F+ +N FF+
Sbjct: 1530 WVAHLIYWWVSIMALCVAPFLFNPHQFDWNDFFV 1563
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 186 TDLPQRVRHAAKDNAHGIQTSLSLRLTVKKRVYSLLLMICLMIIK 52
T + RVR A + G TSL + + YS L I MI +
Sbjct: 31 TSMEARVREATNNEPWGASTSLMMEIAQGTHNYSQLNEILPMIYR 75
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 309 WWIGLGMITI 338
WW+GLG+I I
Sbjct: 214 WWVGLGLIAI 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,086
Number of Sequences: 5004
Number of extensions: 45568
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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