Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c18
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 31 0.79
05_04_0397 - 20937280-20937386,20937494-20939681 29 1.8
10_07_0055 - 12424320-12424899,12424978-12425160,12425810-124259... 28 5.5
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 28 5.5
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 27 7.3
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 27 7.3
12_02_0961 - 24851687-24851962,24852134-24852405,24852521-248529... 27 9.7
12_01_0441 + 3484003-3484374,3485071-3485151,3485242-3485514,348... 27 9.7
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 30.7 bits (66), Expect = 0.79
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 141 EHYPLLHDELSEEDQSIPRHYRRRSFSNRN 230
EH P++HD+ +D +P + S NRN
Sbjct: 73 EHIPVVHDDDEADDVHVPSQHDEHSVKNRN 102
>05_04_0397 - 20937280-20937386,20937494-20939681
Length = 764
Score = 29.5 bits (63), Expect = 1.8
Identities = 40/144 (27%), Positives = 54/144 (37%), Gaps = 8/144 (5%)
Frame = +3
Query: 114 LRIVMSEYREHYPLLHDELSEEDQSIPRHY--RRRSFSNRNRIKVNLKGAAAIIKHWPDH 287
++IV + P L E+ E + H RRS +N RI G AA K
Sbjct: 563 MQIVAARLSRAEPPLRREVVEYMLDVGSHMFSLRRSKANFYRITSLFCGFAATAK----- 617
Query: 288 WTRFVAYWWIGLGMITITTFIIYNSFFILTLMPEAQLKPVTNQIFDTGL----YKTNKPN 455
W + W ITT +++ F IL PE L + +F GL YK P
Sbjct: 618 WYDGIRSW-----RNPITTVLVHMLFLILICYPELILPTIFLYMFMIGLWNYRYKPRHPP 672
Query: 456 TAKTVWMHVFIEKDKEID--FDEY 521
T H E+D FD +
Sbjct: 673 YMDTKLCHAEFTNPDELDEEFDSF 696
>10_07_0055 -
12424320-12424899,12424978-12425160,12425810-12425958,
12426339-12426518,12426610-12426729,12427240-12427383,
12427613-12427777,12427879-12428184,12428258-12428621,
12428746-12429074
Length = 839
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +3
Query: 375 TLMPEAQLKPVTNQIFDTGLYKTNKPNTAKTVWMHVFIEKDKEIDFDE 518
TL+P KPVTN L K P TAK ++ +KEID +E
Sbjct: 95 TLLPSKASKPVTN-----FLRKRVDPETAKYFLEISYLFDNKEIDLEE 137
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 141 EHYPLLHDELSEEDQSIPRHYRRRSFSNRN 230
EH P+ HDE +D ++P S +RN
Sbjct: 174 EHMPVGHDEDEADDVNVPAQAEENSIRHRN 203
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 27.5 bits (58), Expect = 7.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 258 AAIIKHWPDHWTRFVAYWWIGLGMI 332
AA +KHW D + + ++W+G ++
Sbjct: 196 AAKLKHWKDEFVSTLQHYWLGTKLL 220
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.5 bits (58), Expect = 7.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 258 AAIIKHWPDHWTRFVAYWWIGLGMI 332
AA +KHW D + + ++W+G ++
Sbjct: 204 AAKLKHWKDEFVSTLQHYWLGTKLL 228
>12_02_0961 -
24851687-24851962,24852134-24852405,24852521-24852953,
24853554-24853676,24853681-24853686
Length = 369
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 387 EAQLKPVTNQIFDTGLYKTNKPNTAKTVWMHVFIEKDKEIDFDEYIPY 530
+ + P + F TG + PN++++ H IE++K D DE+ Y
Sbjct: 182 KTKTNPNKDDPFSTGK-EPEDPNSSRSHVKHEMIEEEKSDDDDEHADY 228
>12_01_0441 +
3484003-3484374,3485071-3485151,3485242-3485514,
3485695-3485826,3485903-3486076,3486164-3486393,
3486562-3486679,3486717-3486743,3486948-3487079,
3487189-3487323,3487393-3487599,3487772-3487936
Length = 681
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 415 KFSIQACIKLISQTLQKQYGCTYS*RKIKKSISTNTY 525
KF I A IKLIS+ + G + K+K+ + TY
Sbjct: 636 KFEIPAKIKLISEPWTPESGLVTAALKLKREVLRKTY 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,003
Number of Sequences: 37544
Number of extensions: 244082
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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