Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c18
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    29   2.2  
AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    28   5.0  
L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    28   5.0  

>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -3

Query: 538 NLIYGMYSSKSISLSFSMNTCIHTVFAVFGLLVLYKPVSKI*FVTGFNCASGINVKIKKL 359
           N+   M++S+   +   +N+C+  +F    L +    +  I F   F+C  G+  +I  +
Sbjct: 98  NMTAIMFTSEECFVQHVLNSCVRFLFIAIELALNVDRIIVILFRKHFHCYPGVRGEILNI 157

Query: 358 LYII 347
           L +I
Sbjct: 158 LAVI 161


>AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical
           protein Y38C1BA.1 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 530 IRYVFVEIDFFIFLY--EYVHPYCFCSVWLISFIQACIENLIRH 405
           IR +F+ I  F+  Y  +Y   +  C++W + FI  CI  +  H
Sbjct: 27  IRDMFMNIRRFVRWYTLDYDMGHALCNIWWLWFIYQCIHIIFIH 70


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 356 VYYKCSNGYHSKSNPPIRYKS 294
           V Y+CSNG+H  ++P   Y+S
Sbjct: 563 VEYECSNGWHLANSPSPSYRS 583


>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 258 RLLSDLL*YDFCSKRNGVGNDVESTDLPQRVRHAAKDNAHGIQTSLSLRLTVKKRVYSLL 79
           RLLS+LL       +NG+  +     +P+     AKD    ++++ S  L V K V S+L
Sbjct: 363 RLLSNLLRLPIAPTKNGILKEAARIGVPEAAGQTAKDLYKLLESNFS-PLKVAKDVQSVL 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,655
Number of Sequences: 27780
Number of extensions: 240842
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)