Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c17
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   3.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   3.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   5.6  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 NSKQLYVFILKMRLLHAVAV 166
           N+KQ +++ L +  LHA+ V
Sbjct: 4   NTKQAFIYSLALLCLHAIFV 23


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 107 NSKQLYVFILKMRLLHAVAV 166
           N+KQ +++ L +  LHA+ V
Sbjct: 4   NTKQAFIYSLALLCLHAIFV 23


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 331 SSARNEIICRIRHRTDTGNCVVI*TWFYIDATVFYRAYSGQYV 203
           +++ NE++   R +T   N +V      IDAT F + Y G YV
Sbjct: 84  NASNNELV---RTKTLVKNAIVT-----IDATPFRQWYEGHYV 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,071
Number of Sequences: 438
Number of extensions: 3217
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)