Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte12c16
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061884-1|AAL32101.1| 1755|Homo sapiens ubiquitin ligase E3 alp... 32 2.2
AL391814-3|CAI14738.1| 1755|Homo sapiens ubiquitin protein ligas... 32 2.2
AL391814-2|CAI95298.1| 1755|Homo sapiens ubiquitin protein ligas... 32 2.2
AL136223-3|CAI19920.1| 1755|Homo sapiens ubiquitin protein ligas... 32 2.2
AL136223-2|CAI95666.1| 1755|Homo sapiens ubiquitin protein ligas... 32 2.2
AL049843-4|CAI20399.1| 1755|Homo sapiens ubiquitin protein ligas... 32 2.2
AL049843-3|CAI95685.1| 1755|Homo sapiens ubiquitin protein ligas... 32 2.2
AB002347-1|BAA20806.1| 1275|Homo sapiens KIAA0349 protein. 32 2.2
>AY061884-1|AAL32101.1| 1755|Homo sapiens ubiquitin ligase E3 alpha-II
protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AL391814-3|CAI14738.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AL391814-2|CAI95298.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AL136223-3|CAI19920.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AL136223-2|CAI95666.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AL049843-4|CAI20399.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AL049843-3|CAI95685.1| 1755|Homo sapiens ubiquitin protein ligase E3
component n-recognin 2 protein.
Length = 1755
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 1222 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 1281
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 1282 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 1313
>AB002347-1|BAA20806.1| 1275|Homo sapiens KIAA0349 protein.
Length = 1275
Score = 31.9 bits (69), Expect = 2.2
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = +2
Query: 143 PRLLFPQMAFNLESRFPKAPKYVTLLDPGAYQISDTDTKKWNKIAFNSSTPRNIRNEKKL 322
P LL P+ FN F P + + QI + + N+++ +N N +L
Sbjct: 742 PLLLPPRNIFNNRLNFSDQPNLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENVDEL 801
Query: 323 WTHAIYNPEYRKKIPNCPSMMSRQPRFPYESY 418
+ P++R KIP S+ F +Y
Sbjct: 802 QLPEGFRPDFRPKIPYSESIKEMLTTFGTATY 833
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,149,816
Number of Sequences: 237096
Number of extensions: 2375447
Number of successful extensions: 4851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4851
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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