Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c15
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    91   1e-19
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    60   4e-10
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   4.0  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    26   5.3  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   7.0  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   9.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   9.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   9.3  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   9.3  

>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
 Frame = +1

Query: 220 LHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKG 399
           L+  I  + +  LNE++  SGK VFKPWD R D +  VESDAD++LLF +PF G   LK 
Sbjct: 24  LYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTDIVESDADDQLLFQVPFAGAATLKS 83

Query: 400 IKVASEDTDSHPSKLRLFKNRPNMTFDDV-MIEPDQVFELQKDTDG--ILEYCPKIVTFS 570
           I V     ++ P    LF NR ++ FD +  ++  + FE     +G  I E+  K   + 
Sbjct: 84  ILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTRLYQ 143

Query: 571 SVSHLTMHFPKNFGAEN 621
           ++ +L + F K+ G+++
Sbjct: 144 NLQNLNIFFTKSDGSDD 160


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
 Frame = +1

Query: 232 IDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKV- 408
           I+   LECLN+  +   KS F       + S F+ESD DE+L+  IPF   +K+  I + 
Sbjct: 133 IENPQLECLNQQDDHDLKSAFNS-----NPSSFLESDVDEQLMIYIPFLEVVKVHSIAIT 187

Query: 409 -ASEDTDSHPSKLRLFKNRP-NMTFDDV-MIEPDQVFE-LQKDTDGILEYCP-KIVTFSS 573
               +T S P  ++L+ N+P N++F+D     P QV E +  + D      P + V F  
Sbjct: 188 PVKGETSSAPKTIKLYINQPNNLSFEDAESFTPTQVIEDIVYEQDDQPTIIPLRFVKFQR 247

Query: 574 VSHLTMHFPKNFGAENNKNL 633
           V+ L +    N G E    +
Sbjct: 248 VNSLVIFIYSNVGEEETTKI 267


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 406 VASEDTDSHPSKLRLFKNRP--NMTFDDVMIEPD 501
           +AS DTDSH S   L K RP  N+ ++D  ++ D
Sbjct: 21  LASIDTDSHLSPKVLEKLRPTENLAYEDDSLDDD 54


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 408 NLYSFKFYISSEWYIKQQFFISITFNKFASIQSFVPRF 295
           NLY F + +   W+ ++   I+IT + F    +F+P F
Sbjct: 204 NLYEFSYQLEEGWFSRRCSKINITGSVF---DNFIPSF 238


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 247 LECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGN 384
           L+  NE LE  G S F  +  R+  SKF + D          F GN
Sbjct: 167 LDIHNERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGN 212


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 265 IRSNIPSGPNQSFHEDCIVYQYLQHYRDHGHGYNDDETF 149
           IR N     N   + D   Y Y+QH R+ G   N+D T+
Sbjct: 63  IRPNEGEAANYGIYFDDTEYDYMQHLRNIG---NEDATW 98


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 109 LRLSQNTIDSCVFYVLLVLNLYK--LHHNLAI 20
           LRLSQN ID+ V ++     L K  LH +LA+
Sbjct: 434 LRLSQNDIDNVVKFLTSCYKLKKLVLHDSLAL 465


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 336 FNKFASIQSFVPRFKNTFTRTLKGFVQTFQ 247
           FN     +SF+P  KNTFT  +K     F+
Sbjct: 102 FNDPTQPESFLPPPKNTFTSRIKKIKNLFK 131


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -1

Query: 443 NFDGCESVSSDAT--FIPLSF 387
           NFDG E+ S DAT   IP+S+
Sbjct: 425 NFDGLENASYDATKPIIPVSY 445


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 340  HFQQICFYPIFCPKV*KHFYPNPQGIRSNIPSGPNQSFHE 221
            H++Q   Y I+       F  NP G+ +N+ SG    F+E
Sbjct: 2679 HYKQQVGYQIYKIAGRADFLGNPVGLFNNVASGVFDMFYE 2718


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 283 KSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSH 432
           K + +  D R  R ++  S  +E+  F I +  + KLK + + S   D+H
Sbjct: 212 KEIRQGRDARNYREQYKISSENEKRWFTIIYCADNKLKAMHMISPTLDAH 261


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 142 EFLK*TLGC*ILRLSQNTIDSCVFYVLLVLNLYK 41
           EF K  LGC ILR+   T D  +  +L++  +++
Sbjct: 626 EFEKMPLGCNILRVDAQTKDGALMDMLILQPIWR 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,305
Number of Sequences: 5004
Number of extensions: 55831
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)