Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte12c15
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560...    57   1e-08
03_06_0291 + 32882831-32882998,32883238-32883361,32884528-328845...    53   2e-07
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864...    38   0.005
06_01_0249 - 1877327-1877331,1877385-1877495,1877557-1877632,187...    28   5.5  
09_04_0702 - 19587943-19588168,19588423-19588525,19588809-195889...    28   7.2  

>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
            21156291-21156428,21156513-21156650,21156756-21157013,
            21157404-21157541,21158023-21158092,21158267-21158480,
            21158614-21158719,21159844-21160077,21160836-21161000,
            21161083-21161232,21161308-21161399,21161631-21161712,
            21161800-21161883,21161980-21162096,21162179-21162289,
            21162698-21162892,21164495-21164575,21165671-21165720,
            21165978-21165990,21166518-21166600,21166693-21166833,
            21166879-21166936,21167023-21167072,21167474-21167582,
            21167666-21167727,21168321-21168363
          Length = 1204

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +1

Query: 445  RLFKNRPNMTFDDVM-IEPDQVFELQKDTDGILEYCPKIVTFSSVSHLTMHFPKNFGAEN 621
            R+F NR  + F+D   ++P Q +EL ++  G+LEY  +   F  V++LT+HFP+NFG + 
Sbjct: 1097 RMFINREGIDFNDAQNMQPVQEWELAENLQGVLEYQTRYSRFQGVANLTLHFPENFGGDT 1156

Query: 622  NK 627
             K
Sbjct: 1157 TK 1158



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 26/41 (63%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
 Frame = +1

Query: 256  LNESLEGSGKSVFKPWDKRLDRS-KFVES-DADEELLFNIP 372
            LNES+ GS KSVFKPW++RLD S  F+ES + D ELL  IP
Sbjct: 979  LNESVAGSVKSVFKPWEQRLDTSGGFLESNEGDPELLVFIP 1019


>03_06_0291 +
           32882831-32882998,32883238-32883361,32884528-32884576,
           32884672-32884732,32884871-32884917,32885005-32885082,
           32885462-32885510
          Length = 191

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
 Frame = +1

Query: 211 QYNLHEKIDLDHLECLNESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIK 390
           Q +L + ID   +ECLN+    S  +  K    R D   ++ SD+DE+LL +IPF   +K
Sbjct: 27  QVDLVDFIDWSGVECLNQDPAHSIVNALKQ-GYRDDEGLYLASDSDEQLLIHIPFMQVVK 85

Query: 391 LKGIKVASEDTDSHPSKLRLFKNRPNMTFDDVMIEPDQVFELQKDTDGILEYCP---KIV 561
           L        + D  P  ++LF N+ +M F +V   P     L   ++ + E  P   K V
Sbjct: 86  LHSALFKGPEEDG-PKTIKLFCNKEHMGFSNVNDYPPS-DSLDLSSNHLSESKPMQLKYV 143

Query: 562 TFSSVSHLTMHFPKNFGAENNKNLL 636
            F +V  LT+    N    +   +L
Sbjct: 144 KFQNVRSLTIFIEDNQSGSDVSKIL 168


>08_02_0290 +
           15383473-15383669,15385057-15385267,15386389-15386440,
           15386545-15386863,15387022-15387121,15387391-15387657,
           15387780-15387857,15387943-15388032,15388119-15388168,
           15388267-15388366,15388777-15388875,15389023-15389136,
           15389238-15389412,15389726-15390132,15390565-15390639,
           15391412-15391438
          Length = 786

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +1

Query: 259 NESLEGSGKSVFKPWDKRLDRSKFVESDADEELLFNIPFTGNIKLKGIKVASEDTDSHPS 438
           +ES+EG    +F  +D+R DR   VE+  DE    +I   G++K K +  +++ T S   
Sbjct: 158 SESMEG----LFS-FDERKDRRSDVENSEDERRRLSI---GSLKKKALNASNKLTHSLKK 209

Query: 439 K-LRLFKNRPNMTFDDVMIEPDQ--VFELQKD 525
           +  R  +NRP+ T +DV  E ++  VF  Q++
Sbjct: 210 RGKRKVENRPSFTIEDVRDEEEERAVFSFQQE 241


>06_01_0249 -
           1877327-1877331,1877385-1877495,1877557-1877632,
           1877788-1877868,1877950-1878113,1878211-1878565
          Length = 263

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 187 GSVEDIGIQYNLHEKIDLDHLECLNESLEGSGK 285
           G+V+   I +NLHE  D D L    ES +G+ +
Sbjct: 212 GNVDTTQILHNLHEARDTDELAGFEESWKGNAR 244


>09_04_0702 -
           19587943-19588168,19588423-19588525,19588809-19588923,
           19589061-19589086,19589178-19589398,19589493-19589608,
           19589695-19589953,19590052-19590139,19590236-19590307,
           19590401-19590476,19590746-19590809,19591139-19591259,
           19592391-19592451,19592682-19592828
          Length = 564

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 34  GVIYISSKQVKHKTHSCRWYFGII 105
           GV + S ++ +++ HS RWY G +
Sbjct: 521 GVDFASPERTRYQRHSARWYAGFL 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,771
Number of Sequences: 37544
Number of extensions: 288000
Number of successful extensions: 691
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)